Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02898 ATGACCACACCTTCAACACTCGCGGAAGTGGTTCTGGTACTTGCATTGCTCAGTTGCAGCCCGGGAATAGTATGGGGCAACACACTTTGCCAACAGACAAACGACGAGGTTCGACCTCACAGCGTCAGCATCACCGAATTTGGAGCAGTTGGCGATGGGGTCACTCTCAACACAAAAGCATTTCAAAATGCCATCTTCTACCTGAATTCCTTTGCTGACAAAGGTGGAGCCAAGCTTTTTGTCCCGGCTGGTCGGTGGTTAACCGGTAGTTTTGATCTCATCAGTCATCTCACTTTGTGGTTGGACAAGGATGCAGTAATTCTCGGATCAACGAACCCTGAAGATTGGCCAGTGGTTGATCCTCTACCGTCGTATGGAAGAGGAAGAGAGTTGCCAGGAAGAAGGCATAAAAGTCTCATTTATGGGCGCAATTTGACTGATGTGATCATAACAGGTAACAATGGAACTATCGATGGTCAAGGGAGTATCTGGTGGAGCATGTTTAGGAACAAAACTCTGGATAATACACGTCCCCATTTGATAGAATTGATGAACTCAACCGGGGTCCTCATTTCAAATTTGACCTTCCTGAATTCTCCATTTTGGACAGTCCATCCTGTGTATTGCAGCCATGTTACAGTTCAGAAAGTGGCGATCTTTGCTCCTCTTGATTCTCCAAATACTGATGGGATTGATCCGGATTCTTCTGACAACGTTTGCATTGAGGACTGTTACATAAGCACTGGTGATGATCTGATTGCGATCAAGAGCGGGTGGGATGAGTATGGCATTGCATACGATCGCCCGTGCACAAACATTATCATCCACAGGCTTGTTGGTAAAACTCAAACGAGTGCAGGGATTGCAATAGGGAGTGAGATGTCTGGTGGTGTATCTGAAGTTCATGTAGAAGATGTTCAATTCTACGATTCACATACAGCAATCAGAATAAAGACTTCTCCTGGAAGGGGTGGTTATGTCAGAAACATCTATGTCTCAAACGTGACCTTGACTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGGGAACATCCAGATGATGGTTATGACCCAAATGCTATGCCTGTAATAGAAAAGATTACAATAAAGGATGTGGTGGGAGAGAATATCAAAAGTGCAGGTCTTATAGAGGGTATAGAAGGTGACAATTTTGTGAACGTTTGCCTATCAAACATTGTCCTTAATGTGAGCTCAAACCATCCATGGAACTGCTCCTATGTTAAAGGATATTCCGACTTGGTTCTGCCAGAAGCTTGTGAGCCTCTCAAAGAAAGAATATTCCCAGAGCATTGTTCAGATTGTTACTATATGTCAAATCAAATTCAGAGTTCGAAAAGCCAAAACAGAGCAGGGCAAAGAAACTTGAGGTGA 1398 0.4371 MTTPSTLAEVVLVLALLSCSPGIVWGNTLCQQTNDEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGRRHKSLIYGRNLTDVIITGNNGTIDGQGSIWWSMFRNKTLDNTRPHLIELMNSTGVLISNLTFLNSPFWTVHPVYCSHVTVQKVAIFAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYDRPCTNIIIHRLVGKTQTSAGIAIGSEMSGGVSEVHVEDVQFYDSHTAIRIKTSPGRGGYVRNIYVSNVTLTNVDIAIRFTGLYGEHPDDGYDPNAMPVIEKITIKDVVGENIKSAGLIEGIEGDNFVNVCLSNIVLNVSSNHPWNCSYVKGYSDLVLPEACEPLKERIFPEHCSDCYYMSNQIQSSKSQNRAGQRNLR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02898 465 Gene3D - 27 419 IPR012334 -
Viun1g02898 465 PANTHER PECTIN LYASE-RELATED 25 451 - -
Viun1g02898 465 SUPERFAMILY Pectin lyase-like 36 431 IPR011050 -
Viun1g02898 465 SMART pbh1 298 319 IPR006626 -
Viun1g02898 465 SMART pbh1 209 235 IPR006626 -
Viun1g02898 465 SMART pbh1 236 268 IPR006626 -
Viun1g02898 465 SMART pbh1 327 348 IPR006626 -
Viun1g02898 465 SMART pbh1 270 292 IPR006626 -
Viun1g02898 465 Pfam Glycosyl hydrolases family 28 137 417 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02898 Viun-Chr1 37874448 37878116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02898 38 459 Glycoside Hydrolase AT3G62110 70.726 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02898 - - gmx:100782602 833.558