Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02872 ATGAGAGTTTGGTTCGGGCAGATTATTGTTTGGAAAGTGACCCATCAACACAATAAATCTTCAAGTCATCAAGAAAACCATGATCAACAGAGCATTTCATCTTCTGTATGCTGCCAGCTAAAGGATAACCTGTTTGAGGCAACTCATGTATGTAAACTTATTGGACATGAAGGTTCAATCTTCCGAATAGCATGGTCATCTTGTGGATCTAAACTGGTATCTGTCTCTGATGACCGGAGTGCACGTGTTTGGGCTGTCTCTATGGAAGGGGAACATGCATTGTGCCACAATTCCACTGCCCTTGTCTTATTTGGACATAATGCTCGGGTTTGGGACTGCTGTATTTCTGATAATTTGATTGTCACTGTTAGCGAGGATTGTACATGTCGTATTTGGGGAGTGGACGGTAAACAACTCCAAGTCATTAAGGAGCACATTGGAAGAGGTATATGGAGATGTTTGTATGACCCAAATTCATCACTGCTTATAACTGCTGGGTTTGACTCTGCTATTAAAGTACATCAACCTCATGCATCTCTGCCCATGGGCTTGGAAGCAGTACAAGGATCCCCTAGTAGTACAGAGTTGTTTTCGATTTGCATACCTAATGTGTCAGAGCATATTGGATTTATGGACAGCAAGAGTGAATATGTTCGATGTTTGCGCTTTTCCTGTCAGGAATCTCTTTATGTTGCCACCAATAATGGTTATCTCTACCATGCTAAATTATGCGACACTGGAGGTGCTCAGTGGAATCAACTTGTCCAGGTCAGCGATGGGGCACCAATTATTTGTATGGATTTATTGGCCAAGGACTCTGTTGAACATGACTGTGGTGCTGAGGATTGGATTGCTGTCGGAGATGGTAAAGGAAATATGACAATTATTGATGTTACCAAGGATGATTGCTCTCCTACAGTGAGATTGTGCTTTACTTGGCCAGCTGAAACGGAGAGACAGCTCTTGGGTACTTATTGGTGCAAATCTCTGGGATGTAGGTATGTCTTCACAGCTGATCCTAGAGGAACATTGAAACTCTGGAGATTGCCTGACCCTTCACAATCTGATCTTCAGAGCTCCACGAGGAGTAACAAAGTATCACTTATAGCAAAGTTCATATCAAATTATGGAATGAGGATAATGTGTTTGGATGCATGTATGGAGGAAGAGGTCTTAGCATGTGGTGATGTGCGGGGTAATATGGTTTTGTTCCCTTTGCTAAAGAATCTGGTCCTGAGCATATCTGACACAGAAGAAAGGAAGATACCTCCAGTAAATAATTTCAAAGGAGTTCATGGGATTTCAAGTGTCTCCAGTGTTTCTGTGACCAAGCTTGGTTATAATCAGCTAGAGATACGCTCAACTGGAGCAGATGGTTGCATATGCTATCTGGAATATGACAAAGAAATGCATAATTTACAATTTACGGGAATGAAACAAGTTAAAGAATTGTCTTTGATTGAGTATGTTTCTGTGGATAACAAGTCTGGTGATAGATTGTCAAGCAGCTATGCAGCTGGTTTTGCATCTGTGGATTTCATAGTATGGAACTTAGTGAACGAAAATAAGGTGGTGAACATTCCATGTGGTGGATGGCGACGTCCTCATTCCTTTTATCTGGGTGATATACCAGAGATGAGGAACTGCTTTGCCTTTGTCAAGGATGATTTGATACATATACATAGACACTGGATTCATAATAGAGATGGGAAGGTTTACCCTCAAAATTTACACACGCAATTCCATGGTAGAGAGATACATTCCTTGTGCTTTATCTCTGAAGATGTTCTAGTTGGAGATAATTTCAAGTGCACCTTATTTTCTAAATCAAGTTGGATTGCAACTGGATGTGAGGATGGAACTGTGAGGTTGACTTGGTACTCTCCAGGCACTGAAAATTGGTCCATGTCAAAACTGCTTGGAGAACATGTTGGAGGATCAGCGGTGAGATCAATTTGTTGTGTGTCGAAAGTACACACAATTTCACCAGATATGGGTGATGTACCTGATGGGAGGATTGAACTGAATGCTGCTCTTGAGAACAAACATAATCCAACATTACTCATATCAGTGGGTGCAAAGCGTGTCTTAACCTCTTGGTTATTAAAAAATACGAGGCTGGACATAAAAAATGACTTCATAATCAATCATCAACACAAATCAGAAGATGATGACAGTTTTTTGTCAAGTTTGTCCTCATCAATGACGTTCCAATGGCTGTCCACTGATATGCCAGCCAAATATTCAGTTACACGTGATACTCCCAAAAATAATGTGCAGAAGATAGTTGGTGTAGCCGAAAATGTTTGTCATACAAATAATGATGCTGGAATGATTTCTGAGAGTGGAATGGCAAACTTGATCAGAGACAAACATGAAGATGACTGGAGATATCTTGCAGTCACAGCTTTTCTTGTTAGATGTTCTGGTTCCAGGATATCTGTCTGTTTTGTTGTTGTTGCATGTTCAGATGCCACGCTTATGTTACGGGCTTTAATTTTACCCTTTCGCTTGTGGTTTGATGTCGCTTTACTGGTTCCTTTATTGGCACCAGTTTTGTCATTGCAGCATATCATATTTCCCCTGTGTAGGCCTTGTAAAGAAAACATCCAAGCTGGAAATGTTTATATTGTGATTAGTGGGTCTACTGATGGCAGTGTTGCTTTTTGGGACCTAACTGACAGTGTTGAAGCTTTTATGCAACGGGTTTCAGTTTGTAATGTTGAAAAGCTTTTTGATTGTCAAAAGCGACCACGAACGGGGAGAGGAAGTCAGGGTGGTAGACAGTGGAGATCCTTACGCAGAGACTTGTCAAAGAAAAGACAAGACAGCAGTCTGGTCACTTTGAAAGCCAAAGAGAAGATCGAAAAGGGGACCCCTTACGTGCCAAGTGATTCTGAAGACAGTAGAACGGGTTGTTCTCAATCCACACATATGGCTCTCCTGGAGTTAGAAAGCAAGACTGATAATTCCTCGATGGAAATATGTGAAATACAGCCTCTATGCCTGCAAAAGATTCACCAATCTGGTGTCAACTGTCTCCATGTTTCAGAGATAAAGAGTGGGCAAAATACTGACTGTTGTCAAACGTACAGCATAGTTAGTGGGGGTGATGATCAAGCACTTAATCATCTAATGGTTGAATTATCACCTAAATCAATAAATTTACATGACGGGATTTTGTGCCCTGAGATCACTCGTATTGCCTCTGTGCCTGAATATGGAAAGGACTTCAACTTTCAAAATATGAGCAAGAAATTTAAGATTAGATTCTTAAATAACGAAAAATTACCGTCTGCCCACAGCGCTTCCGTCAAAGGTGTCTGGACAGACGGATCCTGGGTGTTTTCCACTGGACTTGATCAGCGGGTCAGGTGCTGGCGTCTTCAGCGGAGTAAACTAATAGAGCATTCATATCTAATAGTTAGTGTTCCAGAGCCAGAAGCGTTATCTGCTAGGGCTTGTGGCAGGAACCAATATCAAATTGCTGTCGCGGGAAGAGGGATGCAAATAATTGATTTTTCTGAATCTTGA 3534 0.4131 MRVWFGQIIVWKVTHQHNKSSSHQENHDQQSISSSVCCQLKDNLFEATHVCKLIGHEGSIFRIAWSSCGSKLVSVSDDRSARVWAVSMEGEHALCHNSTALVLFGHNARVWDCCISDNLIVTVSEDCTCRIWGVDGKQLQVIKEHIGRGIWRCLYDPNSSLLITAGFDSAIKVHQPHASLPMGLEAVQGSPSSTELFSICIPNVSEHIGFMDSKSEYVRCLRFSCQESLYVATNNGYLYHAKLCDTGGAQWNQLVQVSDGAPIICMDLLAKDSVEHDCGAEDWIAVGDGKGNMTIIDVTKDDCSPTVRLCFTWPAETERQLLGTYWCKSLGCRYVFTADPRGTLKLWRLPDPSQSDLQSSTRSNKVSLIAKFISNYGMRIMCLDACMEEEVLACGDVRGNMVLFPLLKNLVLSISDTEERKIPPVNNFKGVHGISSVSSVSVTKLGYNQLEIRSTGADGCICYLEYDKEMHNLQFTGMKQVKELSLIEYVSVDNKSGDRLSSSYAAGFASVDFIVWNLVNENKVVNIPCGGWRRPHSFYLGDIPEMRNCFAFVKDDLIHIHRHWIHNRDGKVYPQNLHTQFHGREIHSLCFISEDVLVGDNFKCTLFSKSSWIATGCEDGTVRLTWYSPGTENWSMSKLLGEHVGGSAVRSICCVSKVHTISPDMGDVPDGRIELNAALENKHNPTLLISVGAKRVLTSWLLKNTRLDIKNDFIINHQHKSEDDDSFLSSLSSSMTFQWLSTDMPAKYSVTRDTPKNNVQKIVGVAENVCHTNNDAGMISESGMANLIRDKHEDDWRYLAVTAFLVRCSGSRISVCFVVVACSDATLMLRALILPFRLWFDVALLVPLLAPVLSLQHIIFPLCRPCKENIQAGNVYIVISGSTDGSVAFWDLTDSVEAFMQRVSVCNVEKLFDCQKRPRTGRGSQGGRQWRSLRRDLSKKRQDSSLVTLKAKEKIEKGTPYVPSDSEDSRTGCSQSTHMALLELESKTDNSSMEICEIQPLCLQKIHQSGVNCLHVSEIKSGQNTDCCQTYSIVSGGDDQALNHLMVELSPKSINLHDGILCPEITRIASVPEYGKDFNFQNMSKKFKIRFLNNEKLPSAHSASVKGVWTDGSWVFSTGLDQRVRCWRLQRSKLIEHSYLIVSVPEPEALSARACGRNQYQIAVAGRGMQIIDFSES 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02872 1177 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 84 IPR001680 GO:0005515
Viun1g02872 1177 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 84 - -
Viun1g02872 1177 MobiDBLite consensus disorder prediction 917 944 - -
Viun1g02872 1177 Pfam WD domain, G-beta repeat 50 84 IPR001680 GO:0005515
Viun1g02872 1177 Pfam WD domain, G-beta repeat 577 624 IPR001680 GO:0005515
Viun1g02872 1177 Pfam WD domain, G-beta repeat 104 132 IPR001680 GO:0005515
Viun1g02872 1177 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 229 1135 IPR011047 -
Viun1g02872 1177 Gene3D - 4 201 IPR015943 GO:0005515
Viun1g02872 1177 Gene3D - 863 1171 IPR015943 GO:0005515
Viun1g02872 1177 Gene3D - 202 476 IPR015943 GO:0005515
Viun1g02872 1177 SUPERFAMILY WD40 repeat-like 6 353 IPR036322 GO:0005515
Viun1g02872 1177 ProSiteProfiles Trp-Asp (WD) repeats profile. 878 900 IPR001680 GO:0005515
Viun1g02872 1177 PANTHER WD REPEAT PROTEIN 5 1176 - -
Viun1g02872 1177 SMART WD40_4 96 133 IPR001680 GO:0005515
Viun1g02872 1177 SMART WD40_4 997 1046 IPR001680 GO:0005515
Viun1g02872 1177 SMART WD40_4 46 85 IPR001680 GO:0005515
Viun1g02872 1177 SMART WD40_4 573 626 IPR001680 GO:0005515
Viun1g02872 1177 SMART WD40_4 1085 1128 IPR001680 GO:0005515
Viun1g02872 1177 SMART WD40_4 306 348 IPR001680 GO:0005515
Viun1g02872 1177 SMART WD40_4 135 175 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02872 Viun-Chr1 37717545 37729708 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02872 K24737 - gmx:100780968 2000.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02872 1 37717545 37729708 Viun1g02872 1 37717545 37729708 ECH