Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02848 ATGGGTACGGAGAGAAAGAGGAAGGTGAGCTTGTTCGACGTGGTAGATGAATCTGTAGCGAAGATAGCGAAAACAAATGGCGGCGCCAATAACAGCGTTGCCAATGCTCTCATCAATCGCTGGAACGCAAGGCCTTACTCTCAAAGGTACTTCGAGATTTTGGAGAAGAGAAAAACCCTCCCCGTTTGGCACCAGAAAGAAGAGTTCTTACAAGTTCTCAAAGATAACCAGACTTTGATTCTTGTCGGTGAAACTGGTAGTGGCAAAACCACTCAGATTCCTCAGTTTGTTTTGGACGCTGTCGAGTTAGAGACTCCAGACAAACGTAGGAAGATGATGATTGCGTGCACTCAGCCTCGGAGAGTGGCTGCGATGTCTGTTTCGCGTCGTGTGGCTGAAGAGATGGATGTAACCATCGGGGAAGAGGTTGGTTACAGTATCAGATTTGAAGACTGCAGTAGTGCGAGGACAGTTTTGAAGTATCTCACAGATGGTATGCTTTTGAGAGAAGCGATGACGGATCCACTTTTGGAACGATACAAAGTAATTATTCTTGATGAGGCACATGAGAGGACTTTGGCTACCGATGTGCTGTTTGGTCTTCTTAAGGAAGTGCTTAGAAATAGACCTGACCTGAAGTTGGTTGTTATGAGTGCAACTCTTGAAGCTGAAAAGTTCCAGGGCTACTTTAATGCCCCACTTATGAAGGTTCCTGGAAGACTACATCCGGTGGAAATCTTCTATACTCAGGAGCCAGAGCGGGATTACTTGGAGGCTGCTATTAGGACTGTGGTGCAGATACACATGTGTGAACCTCCGGGAGATATACTTGTTTTTCTCACAGGAGAGGAAGAGATTGAGGATGCGTGCCGCAAAATATCAAAAGAAATATCAAATTTGGGAGACCAGGTGGGTCCTGTGAAAGCAGTTCCCTTGTATTCTACCCTTCCTCCTGCTATGCAACAGAAGATTTTTGAGCCAGCTCCACCTCCACTAAAGGAGGGAGGGCCTGGAAGGAAGATTGTGATATCAACAAATATAGCAGAAACTTCGTTGACAATTGATGGTATAGTCTATGTTATTGACCCTGGATTTGCTAAGCAGAAGGTTTACAACCCACGGGTCCGTGTCGAGTCTTTGTTGGTGTCTCCAATATCAAAGGCTAGTGCTCATCAGAGATCTGGGCGTGCTGGAAGAACTCAGCCAGGGAAATGTTTTCGACTTTATACTGAAAGAAGTTTCAATAATGATCTTCAGCCACAGACCTACCCTGAAATCTTGAGATCTAATCTAGCCAACACTGTTCTTACCTTAAAGAAACTTGGTATAGACGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCCCCAGAGACCTTGATGCGAGCACTGGAAGTGTTGAATTACTTGGGTGCTCTGGATGATGATGGAAACTTAACTAAGCTGGGTGAGATTATGAGTGAATTTCCACTGGACCCTCAGATGTCGAAGATGCTCGTTGTTAGTCCTGAATTCAACTGTTCAAATGAGATTCTTTCTGTTTCTGCCATGCTATCAGTACCCAATTGCTTTGTCCGGCCTAGGGAGGCACAGAAAGCTGCGGATGAAGCAAAAGCTAGGTTTGGACACATTGATGGAGATCACCTCACGCTCTTGAATGTATACCATGCGTACAAGCAAAATAATGAGGACCCTTCTTGGTGCTACGATAACTTCGTTAATCACAGGGCGTTGAAAGCAGCAGATAATGTTAGACAACTAGTGCGAATCATGGCTCGGTTTAACCTGAAGTTATGCAGCACTGATTTTAATAGCCGTGATTACTATGTCAACATAAGAAAGGCAATGCTAGCTGGCTATTTCATGCGTGCTCATCTGGAACGGACAGGACATTACCTGACGGTGAAAGACAACCAGGTGGTGCACTTGCATCCATCAAATTGCCTGGACCACAAACCGGAGTGGGTAATTTATAATGAATATGTTCTTACTAGTCGGAATTTTATTCGTACAGTTACAGACATACGAGGGGAATGGTTGGTTGATATAGCACCACATTACTATGATTTGTCTAATTTCCCCCAATGTGAGGCAAAGCGTGTTCTAGAGAAACTTTACAAGAAGCGAGAAAAGGATAAGGAGGAAACTCGGAGTCGCAGATAA 2163 0.4452 MGTERKRKVSLFDVVDESVAKIAKTNGGANNSVANALINRWNARPYSQRYFEILEKRKTLPVWHQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFNGXPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKISKEISNLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPLKEGGPGRKIVISTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKAADNVRQQXVRIMARFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQXAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKKREKDKEETRSRR 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02848 723 PANTHER ATP-DEPENDENT RNA HELICASE 47 695 - -
Viun1g02848 723 Gene3D - 447 556 - -
Viun1g02848 723 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 447 555 - -
Viun1g02848 723 SMART helicmild6 285 402 IPR001650 -
Viun1g02848 723 FunFam Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 14 241 - -
Viun1g02848 723 Pfam Helicase associated domain (HA2) 464 552 IPR007502 GO:0004386
Viun1g02848 723 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 264 443 IPR001650 -
Viun1g02848 723 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 614 690 IPR011709 -
Viun1g02848 723 Pfam Helicase conserved C-terminal domain 268 401 IPR001650 -
Viun1g02848 723 SMART ha2_5 463 553 IPR007502 GO:0004386
Viun1g02848 723 Pfam AAA domain 76 217 IPR003593 GO:0016887
Viun1g02848 723 Gene3D - 242 423 IPR027417 -
Viun1g02848 723 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 242 423 - -
Viun1g02848 723 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 239 IPR014001 -
Viun1g02848 723 CDD SF2_C_RHA 243 410 - -
Viun1g02848 723 SMART ultradead3 57 248 IPR014001 -
Viun1g02848 723 CDD DEXHc_DHX15 48 238 IPR044756 GO:0003724|GO:0005524
Viun1g02848 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 598 IPR027417 -
Viun1g02848 723 Gene3D - 10 241 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02848 Viun-Chr1 37555798 37560375 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02848 K12820 - gmx:100807162 1390.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02848 1 37555798 37560375 Viun1g02848 1 37555798 37560375 ECH