Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02840 ATGGCTCCTCCGAACGATCCAGTGAATGCCACGTTAGGACTGGAGCCACCGGAAAAAGTTTTCGACTTGTCTGACGGGAAACTCTCCGTGGGAGGTGTGCCGTTACTCTCTCAAGTACCCGAGAACGTCACGTTCAATTCCTTCTCCTCAATCTGTGAACCTCGTGATGCCCCACCTTCCATCCTTCAACGTGTCATTGCCGTGTCACACAAAGGTGGCTTCCTAGGATTCTCCCATGTTTCACCCTCCGACAGATTGTTAAACTCCCTGGGAAGTTTCAGCGGTAGAAACTTCCTTAGCATCTTCAGGTTCAAAACATGGTGGTCTACCCAGTGGGTGGGAAATTCCGGTTCAGACTTACAAATGGAAACCCAGTGGGTCCTCTTAGAGGTCCCCGAAACAGAATCCTATGTCGTAATCATTCCCATTATAGAAAAAAGTTTCAGGTCCGCACTTCACCCTGGCTCTGATGACCATGTCATGATTTGCGCGGAGAGCGGTTCTACTCAAGTGAGAGCATCGAGTTTCGGTGCAATTGCATATGTCCACGTGGCTGAAAACCCTTACAACTTGATGAGAGAGGCCTATAGTGCTCTCAGGGTCCACCTTAACTCGTTTAGGTTGTTGGAGGAGAAAACGGTGCCAAGAATTGTTGATAAATTCGGGTGGTGCACATGGGATGCGTTTTACTTAACAGTGAACCCCGTTGGGGTTTGGCATGGGCTTAAGGATTTCAGTGAGGGTGGCGTGGCTCCGAGGTATGTTATCATCGATGATGGTTGGCAAAGTGTGAATTTTGATGATGAGGACCCCAACGAGGATGCTAAGAATCTTGTTCTTGGTGGGGAACAAATGACCGCGAGGCTTCATAGGTTTGAAGAAGGTGAGAAGTTTAGAAAATACCAAAAGGGGCTTCTTTTGGGTCCTAATGCTCCTTCTTTCAACCCGGAGACGGTAAAGCAGTTGATTTCGAAGGGGATTGAAGCTGAGCATTTGGGGAAGAAACGTGCTGCAGCTATTTCAGCTGGGGGTTCGGATTTGGCCGAGATAGAGTTGATGATTGTGAAGGTGAGAAAGGAAATTGATGATCTCTTTGGAGGGAAGGGAAAGGAGAGCAACGAAAGTGGAGGGTGTTGTTGCAAAGCATCGGAGTGTGGTGGGATGAAGGATTTCACAAGGGATTTGAGGACTGAATTCAAAGGTTTGGATGATGTTTATGTGTGGCATGCGCTCTGTGGCGGATGGGGTGGTGTGAGGCCAGGAACTACACATCTTGATTCGAAAATAATACCATGCAAACTCTCTCCTGGTCTTGATGGGACAATGCAGGATCTTGCAGTGGATAAACTAGTGGAAGGTTCCATAGGGCTTGTTCATCCTCATCAAGCTAACGACTTCTACGATTCCATGCACTCTTATCTTGCTCAAGCCGGTGTTACTGGAGTTAAAATTGACGTCATTCACAGTCTTGAATACGTATGCGAGGAATATGGAGGCAGAGTGGAGATTGCCAAGGCTTATTACGATGGGGTGGGAAACTCCATTATCAAGAACTTCAATGGAAGCGGAATCATCGCTAGCATGCAACAGTGCAACGATTTCTTCTTCCTTGGAACTAAACAAATTCCCTTTGGAAGAGTTGGGGATGACTTTTGGTTCCAAGATCCCAATGGGGACCCAATGGGAGTGTTCTGGTTACAGGGGGTGCACATGATTCACTGTTCCTACAACAGCTTATGGATGGGACAGATAATTCAACCCGATTGGGACATGTTTCAATCGGATCATGAGTGTGCCAAATTTCACGCTGGTTCAAGGGCTATTTGTGGTGGTCCTGTCTATGTGAGTGATAGAGTTGGCTCTCATGATTTTGATCTCATTAAGAAGCTTGTCTTCCCTGATGGCACCGTGCCCAGATGCATTTATTTTCCCCTTCCAACAAGAGACTGCCTTTTTAGGAACCCTCTCTTTGACCAAAAAACCGTTCTCAAAATTTGGAACTTCAATAAGTATGGAGGAGTTATTGGTGCTTTCAACTGTCAAGGAGCTGGTTGGGACCCAAAGGCGAAGAAATTCAAGGGTTTCCCAGAGTGTTACAAACCAATATCATGCACTGTTCATGTAACTGAGGTTGAGTGGGATCAAAAGAAAGAAGCAGCACGTATGGGTAAGGCAGAGGAGTATGTTGTGTACCTCAATCAGGCTGAGGTACTGCATTTCATGACCCCCATGTCTGAACCACTGCAATTAACTATTCAACCTTCCACATTTGAGCTTTACAACTTTGTCCCAGTTGAAAAGCTTGGTAGTAGCAACATAAAATTTGCACCCATTGGGCTGACAAACATGTTTAACAGTGGAGGGACAATTCAAGAATTGGAGTATACTGAGAAGGGTGTTAAGGTTAAGGTTAAGGGTGGTGGGAGATTCCTTGCTTACTCAAGTGAATCTCCAAAGAAGTTCCAACTGAATGGTTCTGATGCTGCTTTCCAGTGGCTGCCTGATGGCAAACTGGTTCTCGACCTCGCTTGGGTTGAAGAGAATGGCGGGGTTTCTGATTTGGCAATTTTTTTCTAG 2577 0.4626 MAPPNDPVNATLGLEPPEKVFDLSDGKLSVGGVPLLSQVPENVTFNSFSSICEPRDAPPSILQRVIAVSHKGGFLGFSHVSPSDRLLNSLGSFSGRNFLSIFRFKTWWSTQWVGNSGSDLQMETQWVLLEVPETESYVVIIPIIEKSFRSALHPGSDDHVMICAESGSTQVRASSFGAIAYVHVAENPYNLMREAYSALRVHLNSFRLLEEKTVPRIVDKFGWCTWDAFYLTVNPVGVWHGLKDFSEGGVAPRYVIIDDGWQSVNFDDEDPNEDAKNLVLGGEQMTARLHRFEEGEKFRKYQKGLLLGPNAPSFNPETVKQLISKGIEAEHLGKKRAAAISAGGSDLAEIELMIVKVRKEIDDLFGGKGKESNESGGCCCKASECGGMKDFTRDLRTEFKGLDDVYVWHALCGGWGGVRPGTTHLDSKIIPCKLSPGLDGTMQDLAVDKLVEGSIGLVHPHQANDFYDSMHSYLAQAGVTGVKIDVIHSLEYVCEEYGGRVEIAKAYYDGVGNSIIKNFNGSGIIASMQQCNDFFFLGTKQIPFGRVGDDFWFQDPNGDPMGVFWLQGVHMIHCSYNSLWMGQIIQPDWDMFQSDHECAKFHAGSRAICGGPVYVSDRVGSHDFDLIKKLVFPDGTVPRCIYFPLPTRDCLFRNPLFDQKTVLKIWNFNKYGGVIGAFNCQGAGWDPKAKKFKGFPECYKPISCTVHVTEVEWDQKKEAARMGKAEEYVVYLNQAEVLHFMTPMSEPLQLTIQPSTFELYNFVPVEKLGSSNIKFAPIGLTNMFNSGGTIQELEYTEKGVKVKVKGGGRFLAYSSESPKKFQLNGSDAAFQWLPDGKLVLDLAWVEENGGVSDLAIFF 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02840 858 PANTHER - 21 848 IPR008811 -
Viun1g02840 858 Pfam Raffinose synthase or seed imbibition protein Sip1 21 839 IPR008811 -
Viun1g02840 858 SUPERFAMILY (Trans)glycosidases 217 630 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02840 Viun-Chr1 37505681 37509272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02840 21 858 Glycoside Hydrolase AT4G01970 59.622 0.0 1051
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02840 K06611 - gmx:100815922 1559.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02840 1 37505681 37509272 Viun1g02840 1 37505681 37509272 ECH