LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g02808	ATGGGTCCTTCTCGTCGCAACAGCAATGGTCGATCACCGCTCGTCAATCAACAGCGTCAAATCACTTCGTTCTTCACCAAAACCCCGTCCCCCTCTCCCACCCTCGCCAAAACCAACCAAAAGCCAAACCCTAACCACGATTCAGATTCTAACCCTAGCCCTAGTTCCACGACTCTCACTCCCTCACCCCTCAATCCCAAGCCGAACAAATCCCTTCTTGTAATTGGCGCTTCCGTTTCTCCACCCTCCGCTTCGTCTTCTCTCTACGGCCAAGAAGTCGTTGGCCGAAGGGTCAAGGTTTATTGGCCTTTAGACAAAGCCTGGTACGAAGGTTCCGTCAAATCCTTTGATAAAAGCACCTCCAAGCACGTGGTTCGTTACTTAGATGACGAAGAGGAATCGCTCATCCTAGCCCAGGAGAAAATCGAGTGGCTCCACGAGTCCTCTACGAAGAAACTTAAACGCCTGCGTCGCGGATTCTCCGACATTAGGAAGATGGAGATTGACGAGGAAGAATTAAAAGAAGAAAGCAACAAAGGAGAAGAAGAACAACAAGATAATGTTAACGATGATGATGATTCCAATGACGAGGATTGGGGGAAGAATGCTGCATCATTGGAGGATGCTGGGGATGGGGAAGAAGATACGGATTTGGAGGACGAGGATGAAGAGGACGTAGCCGGGAGTGCTAAAGGAAAAAAGGTTGAGGCTAAAAAGCGGAAACTAAGTGCAACGGATAAACTAGAGCCTGCGAAAAAGAGCAAGAGTGGAGTGGAAGTTTGTAAAGGGAGTTTCAAGCTCTCAGTGATGGAGCCTACTACTAATTTGGAGATTAAAAAGACATCTAGTGGCGATGACAATGTTTCATTTACTGAGACCTCTGAAAGATTTGCATCTCGTGAAGCTCAGAAACTGCGCTTCCTGAAAGTAGACCGCAGGGATGCCAAGCGAAGAAGACCAGGGGATGAAAACTATGATTCAAGAACTCTCTACTTACCTCCGGATTTCTTAAGGAGTTTGTCAGAGGGTCAGAAACAATGGTGGGAGTTCAAGTCAAGGCATATGGACAAAGTGTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGAGTTAAAGAGCTTGATTTGCAATATATGAAGGGAGACCAACCTCATTGTGGATTTCCAGAGAAGAACTTCTCAATGAACGTGGAGAAACTGGCTAGGAAGGGTTATCGAGTTCTTGTTGTGGAGCAGACTGAAACACCTGAACAGCTGGAGCTTCGACGTAAGGAGAAGGGCTCTAAAGATAAGGTTGTAAGGCGAGAGATATGTGCAGTGGTAACAAAAGGTACATTAACGGATGGGGAGTTGCTGTCAGCAAACCCCGAAGCTGCATATCTAATGTCCCTAACTGAGCATCATGAGAAACTTCCAAATGAAATTTCAGATCATAACTACGGTGTTTGTATAGTTGATGTTGCCACGAGTAGAGTTATTCTTGGACAGTTTAAGGATGACTTGGACTGCAGTGCATTGTGCTCTATCTTGTCTGAGATCAGGCCTGTTGAAATTGTTAAACCTGCCAAACTACTGAGTGCTGAAACGGAGAGAGCTCTGCTGAAGCATACCAGAAACCCTTTAGTGAATGAATTAGTTCCAGGTGTGGAATTCTGGGATGCTGGCAAAACACTGGATCAGTTGAAGAAAATTTATGGGAACGCTAGTGATGTTAGTGTTGAAGATAATGGGTTAGACTGCCTGCCAGATGTTTTACAGGAGCTGGTGAAAACAGGTGACAAAAGTATAAGTGCACTTTCAGCACTAGGTGGTGCTCTCTATTATCTGAAGCAGTCTTTTCTAGATGAGAGATTGCTTAGATTTGCACAGTTTGAGTTACTTCCGCAGTCTGGTTTTGAAGAACTTGCTTCAAAACACTACATGGTTCTTGATGTGGCTGCCATGGAGAATCTTGAGATTTTTGAGAATAGCAGGAATGGAGATTCTTCTGGCACACTCTATGCCCAACTAAACCAATGTGTTACTGCATTTGGAAAGAGATTGCTAAAGACATGGCTTGCAAGACCGTTATGTCATGTGGAGTCCATTAAGGAACGCCAGGAAGCTGTTGCAGGTTTGAAGGGAGTTAACCTACCATCTGCTCTAGAATTTCGTAGAGCATTATCCAAGCTACCTGACATGGAGCGATTGCTTGCACGCATATTTTGCTCTAGTGAAGCTAGTGGAAGGAATGCTAATAAAGTTATTCTGTATGAAGATGCAGCTAAGAAGCAAGTACAAGAGTTCATTGCAGCTCTCTGTGGCTGTGAACAGATGCTAGAAGCATGCTCTTCGCTTGGTGTCATTTTGAATAATGTCCAATCTAGACAACTTCATCATTTGTTAACACCAGGTAAAGGTCTTCCTGATGTTCTGATGGAACTTAATCATTTCAAGGATGCTTTTGATTGGGTGGAAGCTAATAGCTCTGGGCGTATAATACCTCATGAAGGAGTCGACACAGAGTATGCCTCAGCCTGTAAGGCGGTTAAAGAGATTGAGTCCAATTTGTTGAAGCATCTCAAGGGGCAAAGGGAACTACTTGGAGACACATCAATTGTTTACGTCACAGTTGGAAAGGATGTGTACCTGTTGGAAGTCCCAGAAAATTTGTCTAGGAATATTCCTCGGGATTATGAATTGCGTTCATCCAGAAAAGGCTTCTTTAGGTATTGGACTCCAGATATTAAGATTTATTTAAAAGAACTCTCCCAAGCTGAATTGGAAAGGGAATCCTTGTTGAAAAATACGTTGCAGAGATTGATTGGGCGCTTTTGTGAAAACCACACGAAGTGGAAGCAGTTGGTCTCTGCAACTGCAGAACTGGATTTGTTGATCAGTTTAGCAATAGCTGGTGACTACTATGAAGGACCAACATGCACACCAACTTTTGTTGGTACATTATGTACTAAAGGAGCTCCTTACCTTCATGCTAAAAGTTTGGGACACCCTGTCCTCAGGAGTGATACCTTAGGCAAGGGTGCGTTTGTTCCCAATGACATAACCATTGGTGGTTCAGATCATGCCAGCTTTATCCTTCTAACAGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGTCAGGTTTGCTTGACAGTGATTTTGGCACAGGTAGGAGCTGATGTCCCAGCAGAAAGCTTTGATTTGTCACCTGTTGATCGGATTTTTGTTCGAATGGGGGCCAAAGATAATATAATGGCTGGCCAAAGTACATTCTTAACTGAGCTTTCAGAAACTGCAACGATGCTGTCATCAGCAACTCGTAACTCATTGGTGGCTCTGGATGAGCTTGGGCGAGGGACTGCAACTTCTGATGGACAAGCCATTGCGGAATCAGTATTAGAACATTTTGTGCGGAAGGTGCAGTGTCGCGGATTGTTTTCTACCCATTACCATCGATTAGCTGTAGATTACATCAACGATCCCAAGGTCTGTCTCAGTCACATGGCATGCCAAGTTGGTGATGGAATTGCAGGTTTAGACGAAGTCACCTTTCTTTACAGGCTAACGCCTGGTGCTTGCCCCAAGAGCTATGGTGTTAACGTTGCTCGGATAGCTGGACTTCCAACTTCTGTGCTTCAGAAAGCTGCTGCCAAGTCTAGAGAATTTGAGGCAAGTTATGGTAAATGCAGAAAGGGGTCTTCTGAAACAAACTCCCCCAATAAAATCTGGGTTGATGAGATAGCAGCTATCATACGAAAATTGACCGAAGTTGCCACCAATTTGAGTTGCCAGGAAACCCTTTCCGTTAGTTCCCTAAGGGAACTTCAGGACAAAGCACGAGAATCGATGCAGCGATGTTAA	3864	0.4438	MGPSRRNSNGRSPLVNQQRQITSFFTKTPSPSPTLAKTNQKPNPNHDSDSNPSPSSTTLTPSPLNPKPNKSLLVIGASVSPPSASSSLYGQEVVGRRVKVYWPLDKAWYEGSVKSFDKSTSKHVVRYLDDEEESLILAQEKIEWLHESSTKKLKRLRRGFSDIRKMEIDEEELKEESNKGEEEQQDNVNDDDDSNDEDWGKNAASLEDAGDGEEDTDLEDEDEEDVAGSAKGKKVEAKKRKLSATDKLEPAKKSKSGVEVCKGSFKLSVMEPTTNLEIKKTSSGDDNVSFTETSERFASREAQKLRFLKVDRRDAKRRRPGDENYDSRTLYLPPDFLRSLSEGQKQWWEFKSRHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGDQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGELLSANPEAAYLMSLTEHHEKLPNEISDHNYGVCIVDVATSRVILGQFKDDLDCSALCSILSEIRPVEIVKPAKLLSAETERALLKHTRNPLVNELVPGVEFWDAGKTLDQLKKIYGNASDVSVEDNGLDCLPDVLQELVKTGDKSISALSALGGALYYLKQSFLDERLLRFAQFELLPQSGFEELASKHYMVLDVAAMENLEIFENSRNGDSSGTLYAQLNQCVTAFGKRLLKTWLARPLCHVESIKERQEAVAGLKGVNLPSALEFRRALSKLPDMERLLARIFCSSEASGRNANKVILYEDAAKKQVQEFIAALCGCEQMLEACSSLGVILNNVQSRQLHHLLTPGKGLPDVLMELNHFKDAFDWVEANSSGRIIPHEGVDTEYASACKAVKEIESNLLKHLKGQRELLGDTSIVYVTVGKDVYLLEVPENLSRNIPRDYELRSSRKGFFRYWTPDIKIYLKELSQAELERESLLKNTLQRLIGRFCENHTKWKQLVSATAELDLLISLAIAGDYYEGPTCTPTFVGTLCTKGAPYLHAKSLGHPVLRSDTLGKGAFVPNDITIGGSDHASFILLTGPNMGGKSTLLRQVCLTVILAQVGADVPAESFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTATSDGQAIAESVLEHFVRKVQCRGLFSTHYHRLAVDYINDPKVCLSHMACQVGDGIAGLDEVTFLYRLTPGACPKSYGVNVARIAGLPTSVLQKAAAKSREFEASYGKCRKGSSETNSPNKIWVDEIAAIIRKLTEVATNLSCQETLSVSSLRELQDKARESMQRC	1287

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun1g02808	1287	Gene3D	-	980	1255	IPR027417	-
Viun1g02808	1287	MobiDBLite	consensus disorder prediction	167	184	-	-
Viun1g02808	1287	SUPERFAMILY	DNA repair protein MutS, domain II	463	663	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Viun1g02808	1287	FunFam	DNA mismatch repair protein	298	461	-	-
Viun1g02808	1287	FunFam	DNA mismatch repair protein	814	945	-	-
Viun1g02808	1287	Coils	Coil	163	186	-	-
Viun1g02808	1287	CDD	Tudor_Agenet_AtEML-like	94	144	-	-
Viun1g02808	1287	SUPERFAMILY	DNA repair protein MutS, domain III	651	972	IPR036187	-
Viun1g02808	1287	Coils	Coil	916	936	-	-
Viun1g02808	1287	Pfam	MutS domain II	477	618	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Viun1g02808	1287	SMART	TUDOR_7	90	148	IPR002999	-
Viun1g02808	1287	Gene3D	-	649	969	-	-
Viun1g02808	1287	MobiDBLite	consensus disorder prediction	1	67	-	-
Viun1g02808	1287	MobiDBLite	consensus disorder prediction	1	72	-	-
Viun1g02808	1287	FunFam	DNA mismatch repair protein	980	1255	-	-
Viun1g02808	1287	Gene3D	-	91	143	-	-
Viun1g02808	1287	SMART	DNAend	668	1009	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Viun1g02808	1287	MobiDBLite	consensus disorder prediction	167	255	-	-
Viun1g02808	1287	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	344	1240	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Viun1g02808	1287	Pfam	MutS domain III	654	969	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Viun1g02808	1287	Pfam	MutS domain V	1033	1223	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Viun1g02808	1287	SUPERFAMILY	DNA repair protein MutS, domain I	329	452	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Viun1g02808	1287	MobiDBLite	consensus disorder prediction	226	255	-	-
Viun1g02808	1287	Gene3D	MutS, connector domain	465	648	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Viun1g02808	1287	MobiDBLite	consensus disorder prediction	209	225	-	-
Viun1g02808	1287	Gene3D	DNA repair protein MutS, domain I	299	460	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Viun1g02808	1287	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	993	1224	IPR027417	-
Viun1g02808	1287	Gene3D	-	814	945	-	-
Viun1g02808	1287	Pfam	MutS family domain IV	838	927	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Viun1g02808	1287	PIRSF	Msh6	2	1273	IPR017261	GO:0006298\|GO:0030983
Viun1g02808	1287	SMART	mutATP5	1029	1221	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Viun1g02808	1287	Pfam	MutS domain I	344	456	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Viun1g02808	1287	SUPERFAMILY	Tudor/PWWP/MBT	93	134	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g02808	Viun-Chr1	37349360	37358140	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g02808	K08737		-	gmx:100811104	2061.96

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun1g02808	1	37349360	37358140	Viun1g02808	1	37349360	37358140	ECH