Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02778 ATGGCCTCTGCATCCTCCATGTCAGTTTCTTTAGAATGCGTGAATGCCTGCAAGCTGTGGAGAGGGGACGGAAGCGGAAAATTCGACTGTAGTCTTCTTTCTTGCGCGTGGAAAGCTCCGAGGGTTCTCAGTGGGTTTCTTGCGAGCACTGCTCATCCTCCTCACCAGTGTTCGGACTTGTCCAACGGACGTAATGGACGAAGGAACCGGTATAATTTTGGATGTGAAGCTTTTAGTGTAGGTGGTTCATGTTCCGATGAACCACTTGGTATTGTACTTTTTGAAGGATTGTCTAGGTCAAACATGTCCCAAATTGCTCCTAGAAGAGGACAATTATGTTGTTCTTCAGCCTTCTCTTCGGACACTGCCACTGAGTTTTCCCCAAAAAGTTTGTGGGAGGATCTTAAACCTGCTATTTCGTACCTGTCTTCAAAAGAACTGGAGTTAGTCCACAATGCTTTTATGTTGGCATTTAAAGCTCACGATGGTCAGAAAAGACGAAGCGGTGAACCCTTCATCATTCACCCAGTCGAGGTTGCACGTATTCTTGGAGAACTTGAACTTGATTGGGAGTCAATTGCTGCTGGATTACTTCATGATACAGTTGAGGATACAAATGTCGTTACTTTTGAGAGGATAGAGGAGGAGTTTGGTGCTACCGTTCGCCACATTGTGGAAGGAGAGACCAAGGTATCAAAACTTGGAAAGTTGAAGTATAAGAATGAAAATGATTCCGTTCAAGATGTGAAAGCAGAAGATCTTCGGCAAATGTTTCTAGCTATGACAGAGGAGGTTCGTGTTATAATTGTCAAATTAGCAGACAGGTTGCATAACATGCGTACGCTATCGCATATGCCTCCACATAAACAGGCTAGCATTGCAATGGAGACATTGCAGGTATTTGCTCCTTTAGCGAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTGTCATTTATGTACACAAATGCGGAAGACTATGCTAAGGTGAAGAGAAGAGTAGCAGAGCTATACAAAGAACATGAGAAAGAACTTCTGGAGGCAAACAAAATATTAATGAAGAAAATCCAAGATGATCAATTCTTAGACCTTCTAACTGTTAAAACAGAAGTCCGTGCTGTCTGTAAAGAGCCTTACAGTATCTATAAGGCTGTTCTCAAATCAAAAAGTTCAATCAGTGAGATTAACCAAATTGCACAGCTTCGTATTGTTATTAAACCAAAGCCATGCATTGGGGTTGGGCCTTTATGCAATCCACAACAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCCAAACCAAATGGCTACCAAAGTCTCCATACGACTGTGATTCCATTTTTGTACGAAAGCATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGAGGCATTGCTGCCCATTATAGTGGGAGAGAATTTGTCACTGGCTTGGTTGGAAGTGCTACACCAAGTGGTAAAAGCTCAAGAGGGAAGACAGTTTGTCTTAACAACGCTAACATTGCTCTCAGAATTGGCTGGCTGAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGTAACATGAGTTCTAGGGAATTTGTGGACACTATTACAAGAGATCTGCTGGGTAGTCGTGTCTTTGTGTTCACACCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTAGTGTCATTGATTATGCTTATATGATACACACTGAAATAGGAAACAAGATGGTAGCCGCGAAGGTCAATGGAAATCTTGTTTCTCCCACACATGTACTTGCAAATGCAGAAGTTGTGGAGATAATCACATATAATGCACTTTCCAGCAAATCTGCCTTTCAGAGGCATAAACAGTGGTTGCAACATGCTAAAACACGGAGTGCGAGACACAAAATAATGAAGTTTCTAAGGGAGCAAGCTGCACGCTCTGCTTCTGATATCACTACGGAAGCAGTCAATGACTTCGTTACTGACTCTGGGGATAGTGAATCAGAAGAACGATCAAAAGGTTCCAGTGGTTCCAAATATCCATGGGGTAAAACGTTTGTGAATGGAGAGGAAATATCAACGTCAACAAAAATTGAGACTGTCCTCCAGGGTAAGAATGGAAGTGTTTGGGTCCCCAAGGTCAACGGGAAACATAATAAGCATGTGCAGCGTGAAAGTTTCAACGGAAAAGGGGAGACGTTACTGCAGGGAAACCTTGTTGCAAAGATGATTCAAGTTAACATTCCAAGATATAAGGAGGTCCTGCCAGGTTTAGAAAGTTGGCAAGCCCAGAAAATTGCTTCTTGGCACAATATGGAAGGGCACTCCATCCAGTGGTTATCTGTAGTATGTATAGACCGAAGAGGCATGATGGCTGAGGTCACTACAGTGTTGTCCACTGCTGGCATATCCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGGTATTTCACGTTGAAGGAAATTTAGAAAATTTGGTCAGTGCTTGCTCTAAAGTAGATCTGATATTGGGTGTTTTGGGATGGTCTACCGGTTGCAGCTGGCCGAGCTTAGTGGAAGAACGTGGCGTTCTGGAATGCTAG 2655 0.429 MASASSMSVSLECVNACKLWRGDGSGKFDCSLLSCAWKAPRVLSGFLASTAHPPHQCSDLSNGRNGRRNRYNFGCEAFSVGGSCSDEPLGIVLFEGLSRSNMSQIAPRRGQLCCSSAFSSDTATEFSPKSLWEDLKPAISYLSSKELELVHNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQASIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAELYKEHEKELLEANKILMKKIQDDQFLDLLTVKTEVRAVCKEPYSIYKAVLKSKSSISEINQIAQLRIVIKPKPCIGVGPLCNPQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSGKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGASVIDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSASDITTEAVNDFVTDSGDSESEERSKGSSGSKYPWGKTFVNGEEISTSTKIETVLQGKNGSVWVPKVNGKHNKHVQRESFNGKGETLLQGNLVAKMIQVNIPRYKEVLPGLESWQAQKIASWHNMEGHSIQWLSVVCIDRRGMMAEVTTVLSTAGISICSCVAEIDGGRGMAVMVFHVEGNLENLVSACSKVDLILGVLGWSTGCSWPSLVEERGVLEC 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02778 884 Gene3D Beta Polymerase, domain 2 327 481 IPR043519 -
Viun1g02778 884 ProSiteProfiles ACT domain profile. 797 868 IPR002912 -
Viun1g02778 884 SUPERFAMILY TGS-like 553 625 IPR012676 -
Viun1g02778 884 SMART hd_13 168 288 IPR003607 -
Viun1g02778 884 CDD TGS_RSH 567 625 IPR033655 -
Viun1g02778 884 Gene3D - 797 863 - -
Viun1g02778 884 Pfam Region found in RelA / SpoT proteins 379 495 IPR007685 GO:0015969
Viun1g02778 884 Gene3D Hypothetical protein af1432 130 325 - -
Viun1g02778 884 SUPERFAMILY ACT-like 797 856 IPR045865 -
Viun1g02778 884 FunFam GTP pyrophosphokinase (RelA/SpoT) 558 632 - -
Viun1g02778 884 Pfam TGS domain 566 625 IPR004095 -
Viun1g02778 884 CDD HDc 170 301 IPR003607 -
Viun1g02778 884 MobiDBLite consensus disorder prediction 676 698 - -
Viun1g02778 884 Pfam HD domain 153 310 - -
Viun1g02778 884 SUPERFAMILY HD-domain/PDEase-like 137 325 - -
Viun1g02778 884 ProSiteProfiles TGS domain profile. 562 625 IPR004095 -
Viun1g02778 884 FunFam GTP pyrophosphokinase RelA 131 326 - -
Viun1g02778 884 CDD NT_Rel-Spo_like 369 489 IPR007685 GO:0015969
Viun1g02778 884 SMART RelA_SpoT_2 379 501 IPR007685 GO:0015969
Viun1g02778 884 Gene3D - 559 634 IPR012675 -
Viun1g02778 884 ProSiteProfiles HD domain profile. 172 279 IPR006674 -
Viun1g02778 884 SUPERFAMILY Nucleotidyltransferase 329 499 IPR043519 -
Viun1g02778 884 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 7 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02778 Viun-Chr1 37158874 37166348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02778 182 497 EF-hand Containing Proteins AT3G17470 30.061 5.70e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02778 K00951 - gmx:100814134 1603.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02778 1 37158874 37166348 Viun1g02778 1 37158874 37166348 ECH