Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02730 ATGGCTGTGGTTGCAGTGCAGCAATTCCTGTGCTTCGCAGAATCAAATTGGAGGAATATAGCAAGGCCATGCATTCCCTCTCACACTACGATTCTTCTACGTTCACGCAAAAAAATTCAATTTTCTCTGATTTCATGCTCTTCATCACAGACCCCAGAAGTTGGTACTCAAACCGCCGAATCCTGCGTCAATTTGGGTCTCGAGCTCTTCTCCAAAGGACGGGTTAAAGATGCTTTAACCCAGTTTGAAACTGCACTTTCCTTGAACCCTAATCCAGTGGAGGCCCAAGCTGCCTTCTACAACAAAGCTTGTTGTCATGCATACAGGGGAGAGGGAAAGAAAGCAGCTGATTGTCTCCGCACTGCTTTGAGGGAATACAACCTGAAATTTGGTACCATACTCAATGATCCCGACTTGGCCTCCTTCAGAGTTTTGCCTGAATTCAAGGAACTACAAGAAGAGGCTAGGCTTGGTGGGGAGGATATTGGCTACAGTTTTCGGCGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCATTTCGTGGGGTTAGGAGATTCTTTTATGTAGCACTGTCAGCAGCTGCAGGAATATCATTGTTTTTTACTGTGCCCAGGCTAATTCGTGCAATTAATGGTGGTGATGGTGCTCCTGATCTCTTGGCAACTTCTGGGAATGCTGCCATTAATATTGGAGGTATTGTTGTTCTTGTGGCATTGTTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTCGCACAAATATCTCGAGATGAGACACTATCAAGGTTGCCTTTGCGGCTTTCAACTAATCGAGTAGTTGAACTTGTGCAGCTACGGGATACAGTTAGACCAGTTATATTAGCAGGAAAAAAGGAAACAGTGTCTCAGGCTATGCAAAGAGCTGAGAGATTTCGCACGGAGCTCCTTAAACGTGGTGTTCTGTTAGTTCCTGTTATCTGGGGAGAAGGTCGGGAAACAAAAGTTGAGAAAAAAGGATTTGGTCTGCAGCCAAAAGCTGCTGAAGCTCTTCCATCTATTGGGGAAGATTTTGAGAAGCGAGCACAGTCCATAACTGCAAAATCGAAATTGAAATCTGAAATTAGGTTCAAGGCTGAGGTTGTGTCTCCTGCAGAATGGGAACGGTGGATAAGAGATCAGCAGAAATCTGAAGGAGTTTCACTTGGTGAAGATGTGTACATAATACTGCGGTTAGATGGAAGAGTTCGAAGATCAGGGAAAGGTATGCCTGATTGGCAGCAAATAGTGAAGGAGCTACCACTAATGGAAGCATTTTTAAGCAAGCTGGAAAGATGA 1314 0.4414 MAVVAVQQFLCFAESNWRNIARPCIPSHTTILLRSRKKIQFSLISCSSSQTPEVGTQTAESCVNLGLELFSKGRVKDALTQFETALSLNPNPVEAQAAFYNKACCHAYRGEGKKAADCLRTALREYNLKFGTILNDPDLASFRVLPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLFFTVPRLIRAINGGDGAPDLLATSGNAAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSQAMQRAERFRTELLKRGVLLVPVIWGEGRETKVEKKGFGLQPKAAEALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPAEWERWIRDQQKSEGVSLGEDVYIILRLDGRVRRSGKGMPDWQQIVKELPLMEAFLSKLER 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02730 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 40 435 - -
Viun1g02730 437 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Viun1g02730 437 Pfam Low psii accumulation1 / Rep27 167 244 IPR021883 -
Viun1g02730 437 Gene3D Tetratricopeptide repeat domain 47 142 IPR011990 GO:0005515
Viun1g02730 437 SUPERFAMILY TPR-like 57 125 IPR011990 GO:0005515
Viun1g02730 437 SMART tpr_5 59 92 IPR019734 GO:0005515
Viun1g02730 437 SMART tpr_5 96 129 IPR019734 GO:0005515
Viun1g02730 437 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 46 152 - -
Viun1g02730 437 Pfam Tetratricopeptide repeat 59 91 IPR013105 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02730 - - gmx:100784188 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02730 1 36900505 36904363 Viun1g02730 1 36900505 36904363 ECH