Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02685 ATGGCTCTGCATTTCAGCAAAATTTCCCCAGAAATCATGATAAGAATGGGTTTGAGGAAGCTACAAGACAAGGTTGCACTTATCACTGGAGCAGCTAGTGGAATAGGAAAGGCCACAGCCACCAAATTTATCAATAATGGAGCTAAGGTTATTATTGCTGATATTAATCAACAGCTTGGTGAGGAGACGGCAAAAGAACTAGGATCTAATGCCACTTTCATAACATGTGATGTCACTCAAGAGTCAGACATATCCAATGCTGTTGAATTTGCCATTTCTAAACACAAACAACTTGATATCATGTACAACAATGCAGGGGTAGCCTGCAAAAGTCCTCTGAGCATCGTTGACCTGGACATGGCCTTGTTTGACAAAATCATGGACATAAATGTTCGTGGTGCTGTGGCAGGTATCAAACATGCAGCACGTGTGATGATCCCACGTGGAAGTGGGTCTATTCTGTGCACAGCAAGTGTCACAGGTGTGATGGGAGGTCTGGCTCAGCACACTTACTCAATATCTAAGTCTGCAGTCGTAGGCATTGTTAAATCTCTGGCTTCTGAGTTATGCAGGCATGGAATCCGAGTCAATTGCATATCACCTTTTGCCATCCCAACACCTTTTGCTCTGGAAGAAATGAGTCAGATATATTCTCATGTTGATAGTCAGAGACATGTGGATATTATTCACAATTCTAGTGTCCTAAAGGGTGTCTATTGTGAACCCGATGATGTTGCTAATGCTGCACTTTTTCTTGCGTCCAATGATGCCAAGTATGTCAGTGGACACAACTTGGTTGTCGATGGGGGTTTCACATCTTTTAAGAATTTGGACTTTCCTGCACCAGATCAAGTGAAGTAG 861 0.4274 MALHFSKISPEIMIRMGLRKLQDKVALITGAASGIGKATATKFINNGAKVIIADINQQLGEETAKELGSNATFITCDVTQESDISNAVEFAISKHKQLDIMYNNAGVACKSPLSIVDLDMALFDKIMDINVRGAVAGIKHAARVMIPRGSGSILCTASVTGVMGGLAQHTYSISKSAVVGIVKSLASELCRHGIRVNCISPFAIPTPFALEEMSQIYSHVDSQRHVDIIHNSSVLKGVYCEPDDVANAALFLASNDAKYVSGHNLVVDGGFTSFKNLDFPAPDQVK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02685 286 PRINTS Glucose/ribitol dehydrogenase family signature 192 209 IPR002347 -
Viun1g02685 286 PRINTS Glucose/ribitol dehydrogenase family signature 25 42 IPR002347 -
Viun1g02685 286 PRINTS Glucose/ribitol dehydrogenase family signature 145 161 IPR002347 -
Viun1g02685 286 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Viun1g02685 286 PRINTS Glucose/ribitol dehydrogenase family signature 171 190 IPR002347 -
Viun1g02685 286 PRINTS Glucose/ribitol dehydrogenase family signature 235 255 IPR002347 -
Viun1g02685 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 190 IPR002347 -
Viun1g02685 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 159 IPR002347 -
Viun1g02685 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Viun1g02685 286 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 158 186 IPR020904 GO:0016491
Viun1g02685 286 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 19 275 - -
Viun1g02685 286 Pfam Enoyl-(Acyl carrier protein) reductase 30 272 - -
Viun1g02685 286 FunFam Short-chain dehydrogenase reductase 13 276 - -
Viun1g02685 286 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 22 272 IPR036291 -
Viun1g02685 286 Gene3D - 15 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02685 Viun-Chr1 36619319 36622172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02685 19 273 Miscellaneous Gene Families AT4G05530 30.769 3.36e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02685 - - ccaj:109796618 473.781