Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02666 ATGGCGGTTTCCGAAGAGGAATGCTCTTCGGCAAAGTCTGGTCCCTCTTCTTCTTCCTCCGCCTCGCGCTACTACCTCTCCAAATGCGTCCTCAGAGGAAGCGTCGTTCTTCAGGTTCTCTACGCTCACATTCGTTCTCCCTCCTCAAATGATATCGTTTTCGGCAAGGAGACGTCTATTGAATTGGTGGTTATTGAGGATGATGGGAATGTGCAATCTGTGTGTGATCAGCCCGTCTTTGGCACCATCAAAGATCTTGCCATATTGCCTTGGAACGAGAAGTTTCGTGCACGTGATCCTCAGCTGTGGGGTAAAGACCTTTTGGTTGCTACATCCGATTCTGGGAAGCTGTCGTTGCTCACGTTTTGCAATGAAATGCACAGGTTTGTTTCTGTAACACATATACAGATGTCTATTCCTGGAAACCCAATGGATCTTCCTGGAAGAAGGTTAGCCGTTGATTCCAGTGGTTGTTTTGTTGCTTCTAGTGCATATGAAGATCGGCTGGCTTTGTTTTCTATGTCAATGTCCAGTGGTGATATCATTGATGAGAGAATTGTATATCCTTCGGAAAGTGAAGGAACTGCAAGTTCTTCCAGAAGCATCCAAAGAACCAGTATCTGTGGTACCATTTGGAGCATCTGCTTCATTTCACAAGATTCCAGACAACCAAGCAAGGAGCAGAATCCTGTACTTGCTGTTATTATAAATAGGAGGGGAGCCCTTCAAAATGAATTGCTATTATTGGAATGGAATGTTAAAGCACACAAAGTACTTTGTATTTCTCAGTATGCTGAAGCTGGTCCTCTGGCATATGACATTGCTGAAGTTCCTAACTCCGGGGGACTTGCATTCCTGTTCAGGACTGGTGATGTTCTCTTGATGGATCTTAGAGATCCCCGCAACCCATCCTGTATTTATAAGACTAACTTGAACATTTTGCCTAATGCCATGGAAGAGCAGACTTATGTGGATGACTCTTGTAAATTACATGATGTTGACGATGAACGCTTTAATGTTGCTGCCTGTGCTTTGTTGGAACTGAGCGATTATGATCCTATGTGCATAGACAGTGACAATGGTGGTGCTAATTCAAGCTACAAGTACATATGCTCATGGAGTTGGGGACCTGAAAATAATAGAGATCCTAGGATGATCTTCTGTGTAGATACTGGGGAGTTTTTTATGATGGAAGTTCTTTTTGATTCTGAAGGCCCTAAAGTTAATCTGTCTGAGTGTCTCTATAAAGGTTTGCCGTGTAAAGCACTTTTGTGGGTTGAAGGTGGATATGTAGCTGCCCTTGTGGAAATGGGGGATGGTGTGGTCCTTAAATTGGAAGATGGAAGGCTATGCTATACAAACCCTATTCAAAACATTGCACCAATCTTGGATATGGCAGTTGTAGATTATCGTGATGAGAAGCATGATCAAATGTTTGCTTGCTGTGGTGTGGCTCCAGAGGGGTCATTACGGATAATTCGAAATGGTATTAATGTGGAAAATCTACACAGGACTGCTTCTATATACCAAGGGGTAACTGGTACTTGGACTGTCAGAATGAAAATTACTGATTCACATCATTCTTTTCTAGTTCTATCTTTTGTTGAGGAAACCAGAATATTGTCAGTTGGCTTAAGTTTTACTGATGTGACTGATTCAGTTGGTTTCGAACCTAATGTCTGTACTCTGGCATGTGGCCTTGTGACTGATGGTGTACTTGTTCAGATCCACCGATATACTGTTAAGCTTTGTTTGCCCACTAAAGCTGCTCATTCTGAAGGTATCCCTTTGCCCTCTCCTATTTCCACATCTTGGTCTCCAGACAATGTGAGTATCAGTCTGGGGGCAGTTGGGCATAATTTCATAGTTGTGTCAACCTCTAACCCATGCTTTTTGTTTATCCTTGGGGTTAGATTGCTATCAGCTTATCAATATGAAATTTATGAAATGCAACATTTGGTACTGCAGAATGAATTATCATGCATTTCCATCCCTGGACAAGAAATTGAGCAAAAACCATCAAATTCATCCATTTCAGCAAATAATAGTACCATCTCTTCTTTCCAAAGTGGAGTGGACATCAGTAAAACCTTTGTTATCGGTACACACAGGCCCTCTGTGGAAATTTGGTTTTATGCACCAGGTGGAGGAATTACAGTAGTTGCTTGTGGGACAATTTCATTGACAAATACAATAGGGACTGCCATCAGTGGTTGTGTACCTCAAGATGTACGACTTGTATTTGTTGATAAGTATTATGTTCTTGTTGGATTGAGGAATGGAATGCTCCTCCGCTTTGAGTGGCCGGTGGAACCATGTCCATCATCACCAATAAATATGGTGGATACTGCTTTATCTTCTATAAATTTGGTAAATTCTGCAAGTAATGCTTTAGGCAAGAGAAACGACCTTCCTTCAACACTTCAATTGATTGCCATTCGACGCATTGGCATTACTCCAGTTTTCTTGGTGCCACTAGGTGACACACTGGATGCTGATATAATTGCTCTTAGTGATAGGCCTTGGTTATTGCATAGTGCAAGACATAGCCTTTCGTATACTTCTATCTCATTTCAACCTTCCACACATGTGACTCCTGTTTGCTCTGTTGATTGTCCAAAAGGAATATTGTTTGTTGCAGAAAACTGTTTACATCTGGTGGAGATGGTTCACAGCAAGAGACTTAATATGCAGAAGTTTCATTTAGAGGGCACTCCTAGGAAGGTCCTGTATCACGATGAAAGCAAAATGTTGCTAGTGATGAGGACTGAACTGAATTGTGGTACATGTTTGTCTGACATATGTTGTGTGGATCCCCTAAGTGGATCAGTAGTGTCGTCTTTTAGACTTGAACTTGGAGAAACAGGAAAATCCATGGAATTAATAAGAGTTGGAAGTGAGCAAGTGCTTGTTGTTGGAACTAGTCTGTCTTCTGGTCCAGCAATAATGCCCAGTGGTGAAGCTGAAAGTTGCAAGGGTCGTCTTCTTGTTCTTTGTCTTGTTCATGTGCAAAATTCTGATAGTGGTTCGATGACGTTCTGTTCAAAGGGAGGGTCATCATCTCAAAAAACTTCACCATTCCATGAAATTGTTTCATATGCTCCTGAACAGTTGTCGAGCAGCAGCCTTGGCAGCAGTCCCGATGATAATAGTTCTGATGGCATCAAACTTGATGAAAATGAAGTATGGCAGTTCCGATTGGCTTATGCAACGAAATGGCAGGGGGTGGTTTTTAAAATCTGTCCTTATCTTGATCGTTACTTCTTGGCATCTGCTGGCAATGCTTTCTATGTTTGTGGTTTCCCTAATGACAATCCTCAAAGAGTGAGAAGGTATGCTATGGGAAGGACGCACCACATGATAACATCTTTGAGTGCACATTTTACAAGAATTGCAGTTGGTGATTGTCGTGATGGAATCATTTTATTTTCTTATCATGAGGAAGCTAGAAAATTGGAGCAACTTTGCTGTGATCCATCACGAAGGTTAGTTGCTGATTGCATTTTGATGGATGCTGATACAGCTGTTGTTTCGGATCGGAAAGGAGGCATTGCTATTTTATGTTCAAATCATTTGGAAGACAATGCAAGTACTGAATGCAACATGACACTAAGCTGTGCTTATTTCATGGCTGAGATTGCCTTGAGCGTCCAGAAGGGCTCATATTCATACAGACTTCCAGCTGATGATGTTTTGCAAGGCGGCAATGGCCCCAAGACAAATGTTGATTCACTACAAAATACTATTATTGCCAGTACCTTGTTAGGAAGCATAATGATCTTCATCCCTTTATCAAGGGAAGAATATGAGTTATTAGAAGCTGTCCAAGAAAGACTTGTTGTCCATCAGTTGACCGCACCTGTTCTAGGAAATGATCATAATGAGTTTCGCAGTCGCGAAATTCGGGGTGGAGTGCCCAAGATACTTGATGGTGACGTGTTAACCCAGTTTCTGGAGCTGACAAGTATGCAGCAAAAGATGATTTTGTCTTCCGAGCCACCTGATAGCAAAACCAAGTTTGAAGCCACTCCTACCCCCCATGTTTCTGTAAATCAGGTGGTTCAACTTCTTGAACGAGTCCATTATGCTCTGAACTAA 4098 0.4192 MAVSEEECSSAKSGPSSSSSASRYYLSKCVLRGSVVLQVLYAHIRSPSSNDIVFGKETSIELVVIEDDGNVQSVCDQPVFGTIKDLAILPWNEKFRARDPQLWGKDLLVATSDSGKLSLLTFCNEMHRFVSVTHIQMSIPGNPMDLPGRRLAVDSSGCFVASSAYEDRLALFSMSMSSGDIIDERIVYPSESEGTASSSRSIQRTSICGTIWSICFISQDSRQPSKEQNPVLAVIINRRGALQNELLLLEWNVKAHKVLCISQYAEAGPLAYDIAEVPNSGGLAFLFRTGDVLLMDLRDPRNPSCIYKTNLNILPNAMEEQTYVDDSCKLHDVDDERFNVAACALLELSDYDPMCIDSDNGGANSSYKYICSWSWGPENNRDPRMIFCVDTGEFFMMEVLFDSEGPKVNLSECLYKGLPCKALLWVEGGYVAALVEMGDGVVLKLEDGRLCYTNPIQNIAPILDMAVVDYRDEKHDQMFACCGVAPEGSLRIIRNGINVENLHRTASIYQGVTGTWTVRMKITDSHHSFLVLSFVEETRILSVGLSFTDVTDSVGFEPNVCTLACGLVTDGVLVQIHRYTVKLCLPTKAAHSEGIPLPSPISTSWSPDNVSISLGAVGHNFIVVSTSNPCFLFILGVRLLSAYQYEIYEMQHLVLQNELSCISIPGQEIEQKPSNSSISANNSTISSFQSGVDISKTFVIGTHRPSVEIWFYAPGGGITVVACGTISLTNTIGTAISGCVPQDVRLVFVDKYYVLVGLRNGMLLRFEWPVEPCPSSPINMVDTALSSINLVNSASNALGKRNDLPSTLQLIAIRRIGITPVFLVPLGDTLDADIIALSDRPWLLHSARHSLSYTSISFQPSTHVTPVCSVDCPKGILFVAENCLHLVEMVHSKRLNMQKFHLEGTPRKVLYHDESKMLLVMRTELNCGTCLSDICCVDPLSGSVVSSFRLELGETGKSMELIRVGSEQVLVVGTSLSSGPAIMPSGEAESCKGRLLVLCLVHVQNSDSGSMTFCSKGGSSSQKTSPFHEIVSYAPEQLSSSSLGSSPDDNSSDGIKLDENEVWQFRLAYATKWQGVVFKICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRYAMGRTHHMITSLSAHFTRIAVGDCRDGIILFSYHEEARKLEQLCCDPSRRLVADCILMDADTAVVSDRKGGIAILCSNHLEDNASTECNMTLSCAYFMAEIALSVQKGSYSYRLPADDVLQGGNGPKTNVDSLQNTIIASTLLGSIMIFIPLSREEYELLEAVQERLVVHQLTAPVLGNDHNEFRSREIRGGVPKILDGDVLTQFLELTSMQQKMILSSEPPDXSKTKFEATPTPHVSVNQVVQLLERVHYALN 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02666 1366 Gene3D - 502 894 IPR015943 GO:0005515
Viun1g02666 1366 Gene3D - 35 456 IPR015943 GO:0005515
Viun1g02666 1366 FunFam Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 497 894 - -
Viun1g02666 1366 Pfam CPSF A subunit region 1064 1319 IPR004871 GO:0003676|GO:0005634
Viun1g02666 1366 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 29 1330 - -
Viun1g02666 1366 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 106 664 IPR018846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02666 Viun-Chr1 36466977 36483310 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02666 K12830 - gmx:100806799 2399.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02666 1 36466977 36483310 Viun1g02666 1 36466977 36483310 ECH