Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02662 ATGATGGCTTTAGTTCCCTTGGGGTCTGAGCTGGAGAGGATCATGGGCTCAGTTCGCTTGCTATATGTCACTATTTTGTTGGCTACAAGCAATGCCATATTTCACGTGCTCATAGCACTGCTGGTGGCGCACAATCCTGTTCTTACATATGATTACCTCATGAATGAGTGTGCAATAGGCTTCTCAGGAGTTCTATTTTCAATGATTGTTATAGAGACAAGCTTGAGTGGAGTTCAATCCAGGAGTGTTTTTGGATTGTTTAATGTGCCTGCCAAGTGGTATGCATTCTTTTTGCTGGTAGTATTCCAGCTTCTCATGCAAAATGTTTCACTACTTGGGCACCTTTGTGGCATTTTATCTGGGTTTGCATATACATATGGATTGTTTAATTTCCTCATACCTGGAACCACCTTTTATTCGTCTATTGAATCCTCCTCCTGGTTTTCTTCATGTGTGAGACGTCCAAAATTTATCGTTTGCACGGGTGGAAATCCTTCAGGTTATATTCCTACACATACAAGCCAAAATTCAACAAGTGGATTGCTTTCTGGAAATATTTGGAGGAACCTGTCTTCATTGATGCCTCAAAGGGAAGTGTCTACTCAGTCAACTGAGGACAGTAGGTTCCCTGGGAGGGGAAGGACCCTTGGTTCTGGTCAAGGTCAAGCTCCTTCTCATCTTCATTCAGATTCAAATCTTCAAGAAAGACTTTTGGATGATAGTAGTCCCAATAGTCCTTTAGTTTCATCCACTCCTAGTAACACTCATCAGTTATCAGAAGGAAGGCATTCAGCTGTGAATGTAGCTCCAACGACTGCTGTTCCACAGCACCAGGGTGCAGTCGTTTCGGAAGAAGGGATTAAAAAACTTGTATCAATGGGCTTTGATAGGACGCAAGTGGAAGTGGCGCTTGCAGCTGCTGATGGTAATCTCAATGTTGCAGTGGAAATACTCATGAGCCAGCAGAGTTGA 972 0.4311 MMALVPLGSELERIMGSVRLLYVTILLATSNAIFHVLIALLVAHNPVLTYDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTTFYSSIESSSWFSSCVRRPKFIVCTGGNPSGYIPTHTSQNSTSGLLSGNIWRNLSSLMPQREVSTQSTEDSRFPGRGRTLGSGQGQAPSHLHSDSNLQERLLDDSSPNSPLVSSTPSNTHQLSEGRHSAVNVAPTTAVPQHQGAVVSEEGIKKLVSMGFDRTQVEVALAAADGNLNVAVEILMSQQS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02662 323 PANTHER DER1-LIKE PROTEIN, DERLIN 1 218 - -
Viun1g02662 323 Pfam Rhomboid family 1 130 IPR022764 GO:0004252|GO:0016020
Viun1g02662 323 SMART uba_6 283 320 IPR015940 -
Viun1g02662 323 FunFam UV excision repair protein RAD23 homolog 281 322 - -
Viun1g02662 323 Gene3D - 255 323 - -
Viun1g02662 323 Pfam UBA/TS-N domain 284 318 IPR015940 -
Viun1g02662 323 CDD UBA_At3g58460_like 284 319 - -
Viun1g02662 323 Gene3D - 1 130 IPR035952 -
Viun1g02662 323 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 281 321 IPR015940 -
Viun1g02662 323 MobiDBLite consensus disorder prediction 195 263 - -
Viun1g02662 323 SUPERFAMILY Rhomboid-like 1 131 IPR035952 -
Viun1g02662 323 MobiDBLite consensus disorder prediction 195 209 - -
Viun1g02662 323 MobiDBLite consensus disorder prediction 218 263 - -
Viun1g02662 323 SUPERFAMILY UBA-like 276 322 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02662 Viun-Chr1 36442437 36451295 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02662 - - gmx:100805745 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02662 1 36442437 36451295 Viun1g02662 1 36442437 36451295 ECH