Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02660 ATGGACACCCAGAGGGAAACAAGTATTCGTTTTGAGACATTCACGTGGAAGATTCAAAATTTCTCAAAACAAAACACCAAGAAACTACAATCCAAGGCCTTCCGAATCCGAGGTTATAAATGGCGTATTCGTTTGTATCCATTAATGAAAAATGTCGACCATTTTTCGTTATATCTGATGGTTGCAGATTCTTTACCACCCTACGGATGGGACAGAAACACATATTTCAAGTTATCTCTGATTAATCAACTGGATGGGAATAAGTCAGTTGTAAAGGAAACTCAGCAGAAGTTCAATGGCGGATATCGTAGCTGGGGCTCATTTTTTGTGAACCGAAGTGTATTCTTCGACTCAAAGCAAGGGTATCTTGTGAACGACACATGCATCATTGAAGCTCATGTTTGTGTCTCTGATCTTAGTTCTCTTGAAGTTAACACCTTGAACACAAACTCTCCAACTTCCAAATCCAAGTTAGGTGATGAAGCAAGAAGAAATTCAGAATCCATAGAGCAGGAAGATGATAAAGAAACAGAAACAGAAACATCAGATGAGAGTGAGACACATAGTTCAACCAGTTGTGGGTCTAGTCAAACAGAAGGGGAAGTTCAAAGTTCAGATTTGACACTAAAAGATCTTCTAGATTTGGGGAGTTTAGGGAAAGAAGAAGCAGCTTTTGTTCCTCTGTTGGAAGAGGCATGCATATGGCATCCTTCTCTGATAAGAAGCCAGAGGAAAAGTTCAAGATGGTTCAGACTATGGGCATTCACATCCTTAGGTCAAGTTCTATACTTGCTGAAGACAAGTAAGGTGAAGGACATGAATGAAGATGCATGCAATCGTCTTCATGGTTTGTGGGAGGAACTTGTAAAACATTCTGGATTTCAGTTGTCTTGGTTGGAGCCTTATGTTGAATCTGCATTGGGTATGAAAGCTCATTTGGAAAAGACAGAAGTTGTGAACAAACTGAAAGACAGTGTTGTTGCTTTGGAGATCAAAATGAAGAAGCTGAGGGGAGAATTGGCGGCTGCAGAAGCTGAGTTTGAGGTAACAAGGAGGGCACTGGTTGAGGCCAAAAAAGGTTTCGTAGAGTTGGATTTTAATGCTGATTTAGGTTATGCTATGTTTTAG 1128 0.4025 MDTQRETSIRFETFTWKIQNFSKQNTKKLQSKAFRIRGYKWRIRLYPLMKNVDHFSLYLMVADSLPPYGWDRNTYFKLSLINQLDGNKSVVKETQQKFNGGYRSWGSFFVNRSVFFDSKQGYLVNDTCIIEAHVCVSDLSSLEVNTLNTNSPTSKSKLGDEARRNSESIEQEDDKETETETSDESETHSSTSCGSSQTEGEVQSSDLTLKDLLDLGSLGKEEAAFVPLLEEACIWHPSLIRSQRKSSRWFRLWAFTSLGQVLYLLKTSKVKDMNEDACNRLHGLWEELVKHSGFQLSWLEPYVESALGMKAHLEKTEVVNKLKDSVVALEIKMKKLRGELAAAEAEFEVTRRALVEAKKGFVELDFNADLGYAMF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02660 375 CDD MATH 13 134 IPR002083 GO:0005515
Viun1g02660 375 Coils Coil 319 353 - -
Viun1g02660 375 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 10 159 IPR008974 GO:0005515
Viun1g02660 375 ProSiteProfiles MATH/TRAF domain profile. 11 134 IPR002083 GO:0005515
Viun1g02660 375 MobiDBLite consensus disorder prediction 157 171 - -
Viun1g02660 375 MobiDBLite consensus disorder prediction 150 204 - -
Viun1g02660 375 SUPERFAMILY TRAF domain-like 13 136 - -
Viun1g02660 375 SMART math_3 13 115 IPR002083 GO:0005515
Viun1g02660 375 Pfam MATH domain 18 135 IPR002083 GO:0005515
Viun1g02660 375 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 347 - -
Viun1g02660 375 MobiDBLite consensus disorder prediction 186 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02660 Viun-Chr1 36437953 36439778 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02660 - - gmx:102664376 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02660 1 36437953 36439778 Viun1g02660 1 36437953 36439778 ECH
Viun1g02660 1 36437953 36439778 Viun8g02512 8 34608322 34610891 ECH
Viun7g00252 7 1787583 1788341 Viun1g02660 1 36437953 36439778 PCT