Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02648 ATGTTTGATTCTCGTACTCACAGCATAAATTTTTTCGTCTTGCTCCGGAGAAACTCCTGGATCTGGAAGTGGAAAAAGGGGGAGATGAAATTCGGGTGTGCATTCAGAGAGTACCTGCAGGAAGAGCGGGAGTGGTTCTTGGGCGAGAAATGTGCTCACGTTGAATACAGCAGGTTGAAAAAAGTGTTGAAGACTTGCAAGAAAGACACCTCTTCAGATAAGGACCTGCTGTGTCAGTGTCAGTCTTGCCCATTATGTGACCAACAGTTCTTCTCTGAGTTGATGAAGGAAGCATCTGATGTGGTGGGGTACTTTAGTTCAAGAGTTCAGCATCTCCTTCATCTTCACATTTCTTCAGGACTACACAGATATGTATTGCGTTTGCGGCAGTGCTTTAGAAGTGATAGGCAAACCCTTACTCAAGAAGGGAGGATTCTAATTGAGTACATTGCCATGAATGCTATTGCAATGAGGAAAATACTTAAGAAATATGATAAAGTACACTGCTCTGTTAATGGGGAGAACTTCAAATCTAGGATGCATGCTGAACACATTGAACTTTTGCACTCTCCTTGGATAATTGAATTGGGTGCTTTTTATCTGAATTCTACTGGACTTGATAGTTGTGAGCTTGATGGAGTCTATGGTCACTTTTCTTGTGATCTAAACTTAAATAGAGATGTAATGACATTGGTTCTTCCTGATTCTATTAAGCTCGAGTATACTCTAACTTGTGCAATTTGTCTGGATCTTGTTTTCAACCCTTATGCTTTGAGTTGTGGTCATATCTTCTGTAAGTCATGTGCTTGCTCAGCTGCCTCTGTGATGATTTTTCAAGGCCTTAAAGCTGCCAGTCCAGAGTCGAAGTGTCCTATATGCAGAGAGGTTGGCGGTTATTCTAAGGCTGTGCGTATGGTAGAACTTGATCTACTTGTGAAAAGAAGGTGCAGAGATTACTGGAGAGAGAGGCTAGCTAGTGAACGAGTTGAGACATTGAAGCAATCCAAGGAATACTGGAATTTACAGTCCACATATGCAATTGGATTGCGCTAG 1053 0.4179 MFDSRTHSINFFVLLRRNSWIWKWKKGEMKFGCAFREYLQEEREWFLGEKCAHVEYSRLKKVLKTCKKDTSSDKDLLCQCQSCPLCDQQFFSELMKEASDVVGYFSSRVQHLLHLHISSGLHRYVLRLRQCFRSDRQTLTQEGRILIEYIAMNAIAMRKILKKYDKVHCSVNGENFKSRMHAEHIELLHSPWIIELGAFYLNSTGLDSCELDGVYGHFSCDLNLNRDVMTLVLPDSIKLEYTLTCAICLDLVFNPYALSCGHIFCKSCACSAASVMIFQGLKAASPESKCPICREVGGYSKAVRMVELDLLVKRRCRDYWRERLASERVETLKQSKEYWNLQSTYAIGLR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02648 350 ProSitePatterns Zinc finger RING-type signature. 260 269 IPR017907 -
Viun1g02648 350 CDD RING-HC_BAH1-like 235 308 - -
Viun1g02648 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 29 348 IPR033326 -
Viun1g02648 350 SUPERFAMILY RING/U-box 237 297 - -
Viun1g02648 350 Pfam RING-type zinc-finger 245 291 IPR027370 -
Viun1g02648 350 ProSiteProfiles SPX domain profile. 29 178 IPR004331 -
Viun1g02648 350 SMART ring_2 245 293 IPR001841 -
Viun1g02648 350 CDD SPX_BAH1-like 30 173 - -
Viun1g02648 350 ProSiteProfiles Zinc finger RING-type profile. 245 294 IPR001841 -
Viun1g02648 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 345 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02648 Viun-Chr1 36395810 36399099 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02648 K16275 - gmx:100781704 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02648 1 36395810 36399099 Viun1g02648 1 36395810 36399099 ECH