Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02633 ATGAGCGCCATGGATTCTTCTTCCATCTATGGCGTCTCCAACTTTTTCCTCCTCTTCCTTCTCTTCCTCCTGCCACTCTCTTCACTCTCCGCATTCCCTCACAACTCTTCCACCACCCCGCAGATTAACTCCAACTCCATCCTCGTCGCGCTTCTCGATTCCCATTACACCGAACTCGCCGAGCTCGTCGAGAAAGCACTTCTCCTCCAGCAGCTTGAAGATGCCGTCGGCAACCACAACATCACCATCTTCGCGCCGCGAAACAAGGCCCTCGAACGCGACCTCGACCCCGAGTTCAAGCGCTTCCTCCTCGAGCCTCGCAATCTTCGCTCCCTTCAGACACTCCTAATGTCCCACATTCTCCCCGCGCGAATCTCCTCTCGCCACTGGCCCGCCGCCGACCGCCGCCACGCCACTCTCGGAAACCACCACCACCTGCATTTAGCCACCAAGCCCTCCGGCCAGATGACCGTCGACGCCGCCGAGATCCTCCGCGCCGACGACGTCGTCCGCCCCGACGGAGTCATCCACGGCATCGAGCGTCTCATAGTCCCCCGATCCGTCCAGGAGGACTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCGGAGGGCGCGCCGGAGATCGATCCCCGTACCCACCGCCTCAAGAAGCCCGCCCCGGTCCCCGCCGGCGCCCCACCCGTTCTCCCTATCTACGACGCCTTGGCGCCGGGACCGTCCATCGCGCCCGCACCGGCACCGGGACCCGGAGGCCCGAAGCACCACTTCAATGGCGAGCGGCAGGTGAAGGACTTCATCCACACGCTCTTGCATTACGGGGGGTACAACGAAATGGCCGATATTCTCGTTAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTGGTTTCAGAGGGTTACATCCTCACCGTTTTGGCCCCAAACGACGAAGCCATGGCGAAGTTGACGACGGATCAGTTGAGCGAACCGGGCGCACCGGAGCAGATTATGTACTATCACATCATTCCCGAGTACCAAACCGAAGAGAGTATGTACAATGCCGTTAGAAGGTTCGGTAAGGTCAGCTACGATACCCTGCGCTTACCCCACAAGGTTCTCGCTCAGGAGTCTGACGGTTCCGTTAAATTCGGTCACGGCGATTCCTCCGCCTACCTGTTCGATCCCGATATTTACACCGATGGAAGGATCTCCGTCCAGGGAATTGACGGCGTTCTTATCCCTCCGGAGGAAGAGGAAGAACGCACCCACCGCACCCCTCCACTTGTCAAGGTTGCCGCTAAACCAAGAAGAGGGAGGTTGATGGAAATGGCCTGTAGCATGTTCGGAGCTTTTGGACAAGGATGCCAATGA 1362 0.5954 MSAMDSSSIYGVSNFFLLFLLFLLPLSSLSAFPHNSSTTPQINSNSILVALLDSHYTELAELVEKALLLQQLEDAVGNHNITIFAPRNKALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPARISSRHWPAADRRHATLGNHHHLHLATKPSGQMTVDAAEILRADDVVRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEIDPRTHRLKKPAPVPAGAPPVLPIYDALAPGPSIAPAPAPGPGGPKHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYILTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLIPPEEEEERTHRTPPLVKVAAKPRRGRLMEMACSMFGAFGQGCQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02633 453 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 6 453 IPR044654 -
Viun1g02633 453 Gene3D FAS1 domain 47 185 IPR036378 -
Viun1g02633 453 SUPERFAMILY FAS1 domain 245 413 IPR036378 -
Viun1g02633 453 SUPERFAMILY FAS1 domain 38 186 IPR036378 -
Viun1g02633 453 SMART fasc_3 82 186 IPR000782 -
Viun1g02633 453 SMART fasc_3 307 412 IPR000782 -
Viun1g02633 453 FunFam Fasciclin-like arabinogalactan protein 16 261 412 - -
Viun1g02633 453 Pfam Fasciclin domain 301 411 IPR000782 -
Viun1g02633 453 Pfam Fasciclin domain 55 185 IPR000782 -
Viun1g02633 453 Gene3D FAS1 domain 286 412 IPR036378 -
Viun1g02633 453 ProSiteProfiles FAS1/BIgH3 domain profile. 266 409 IPR000782 -
Viun1g02633 453 ProSiteProfiles FAS1/BIgH3 domain profile. 43 183 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02633 Viun-Chr1 36299956 36302951 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02633 - - gmx:100818575 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02633 1 36299956 36302951 Viun1g02633 1 36299956 36302951 ECH