Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02618 ATGACCCGTTTTTCTGAGAGGCTCCGTTTGCGCTGGTTGTTTCCGAAACCGACCCGTTTTCTCGCTCTTGTTTCTCTCTCCACTCTTCATCATCTCTGCAAGTCCATCGTTCGCTTCCTACTCTCCCAAACCCTACCCTTCCTCGCTATGGACAACTTCTTCTCCGACTACCTCTCCGACGACTTCGATTCCTCTCCCTACCGTCCCCACCGCCGCTTCCTCCAAGACCACGACCTTGATTTTGCCCACGAGAGGGTCTACCTCCTCCCCTACAGGTGGCTGGTGGAAGCGGCAGATGAAGCTGATCGAAGAGAGGGTGTGCTTTATACGGTGACGTGTAATTCCGATTCCGACTCCGAAATTTTGCTTCATCTGAGGAAGGAGGAGGAGCGCCACAAGATTGGGGTTTCTGGTCGTCAGTATGCGTTGGTTCGGGAGGGATTTTGGTTGCGAACACTCAAACGGTATAATGATTCTAATAATGGAGTGAAAGATGTAGGAAGCCTCTCAAATGCAGAGGATTTTTTGCCAGAATTGTTCCCCTTGCGAGTTAAGATATTTGTTTCATGGGAAACTACTTCACTGGAAGCAAAAATAAGCCAAAAGGAAAATGTGGCTGACTTCTATGAGAAAGCATGTGACATTTTCAATTCTTCATATAACCCAATGCATATTTGGGACTTCTCAGGGCAGACGACACAGTTTTTCCTGAATGACAAATCAAGATTGCCACTTGACTCTTCTGGTCAATCTGTAAAAGAGGTTACTTTGGAGTTACAAGTACATGGGCTTCCAGATTCTATGAGGGGTAATGGGGGAAATGAGATGATTTTAGATAGGTCTCAGATGGAATGTTCACGCAGTGGTTCTGTTACAATGAATGGAAGCACTGACAATGTACCCCCCTGCATAACAGCCAACTATTTTCGAGGTAGTAGTTATAGAGCAATTCGATCTTTGGGCTTGACAGGATTACAGAATCTTGGAAATACATGTTTTATGAATAGTGCCATTCAGTGTCTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGATTACCATAAAGAGATTAATTATGAAAATCCGTTGGGGATGAATGGAGAACTAGCCCTAGCTTTTGGAGACTTGCTTAGAAAACTCTGGGTTCCCAGAGCTATGCCCATTGCACCGAGAACGTTCAAGACGAAACTGGCTAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAGCATGACTCTCAAGAACTTCTTGCTTTTTTGTTGGATGGATTGCATGAAGACCTTAATCGAGTGAAACGCAAACCATATCATGAAGTTAAGGATGCAGATGGTCGTCCAGATGAAGAAGTGGCAGAAGAATATTGGCGAAATCACCTTGCTCGCAATGACTCCATAGTAGTTGATTTGTGCCAAGGTCAGTTTCGGTCAACACTAGTTTGCCCTATTTGCAAGAAGGTTTCTATCACATTTGACCCTTTTATGTATCTATCTCTGCCTTTACCTTCTACAACGATACGGACCATGACTTTGACGGTCATAAGCACTGACGGAATTACATTGCCTTCTACACTTACGGTAACAGTACCTAAATGTGGAACACTGAAGGATCTTATAGGGGCTTTGAGTACTTCTTGTTCTCTGAGAGAAGATGAAACCCTCTTGTTGGCTGAGATATACAGGAATAAAATTTTTCGAGTATTCGAGAATCCTTCTGATTCATTAGGTGATATTAGAGATCAAGATAAAGTTGTCGCTTACCGAATGCCGAAGGATACTGAAACTACTCCCTTGGTTGTTTTTGTCCATGAACGTTCGGTGGAAAATTTTGGGAAGGAAAGTTTGTTTGGTATTCCCCTTGTTACAAGGTTGTCCAATATTTCTTGTGGATATGATGTTCAAAGGGAATTTATGAAGATAATCAATCCATTTTTGATGCGTGCCAAAGATGTATCGGATGATTATGAAAATAATGAAGGTATCAGTAAAAGACCAAGTGAAGATGATGAATTGGGGGATACTACTAACTCCTGCGCAATAGGAAACGATGCAGACTCAATCGTTGGAACAGATGATGGCATACATTTGTCGACTGACTTTGAATTCTACTTACATGGAATGGAGAATGCCAAGTTAATATTGGACAAACCATTAACAGTCACAACGTTGACCAGGAAAGGGCCTGAGATAGTTGTCGTGTGGTCGGATAAGATGCTTAAAATGTATAATACATCTCTGCTTGACTCATTGCCCGAGGTTTTCAAGTCCCAGCTATTCACTAAGAGAATACAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCCTTCTTGAAAGAAGAACCTCTTGGGCCAGAAGACATGTGGTACTGTCCTACCTGCAAAAAACCTCAGCAAGCAACTAAAAAACTAGATCTTTGGAGATTGCCTGAGGTCCTTGTTGTTCATTTGAAGAGGTTCTCATACAGCCGATACTTGAAGAACAAACTGGAAACATTTGTTGATTTCCCAATTAATAATCTGGACTTATCAACATATGTAGCATATGGGAATAGTCAATCTACCAACCGCTATGTGTTATACGCTATTAGTTGTCATTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGATATGGCGATGATAAATGGTATGATTTTGATGACAGCAGAGTCGAAGCTGTTAACGAGGACACGATAAAGACTCCTGCTGCTTATGTTCTTTTCTACAGGAAAGTTTAG 2745 0.4222 MTRFSERLRLRWLFPKPTRFLALVSLSTLHHLCKSIVRFLLSQTLPFLAMDNFFSDYLSDDFDSSPYRPHRRFLQDHDLDFAHERVYLLPYRWLVEAADEADRREGVLYTVTCNSDSDSEILLHLRKEEERHKIGVSGRQYALVREGFWLRTLKRYNDSNNGVKDVGSLSNAEDFLPELFPLRVKIFVSWETTSLEAKISQKENVADFYEKACDIFNSSYNPMHIWDFSGQTTQFFLNDKSRLPLDSSGQSVKEVTLELQVHGLPDSMRGNGGNEMILDRSQMECSRSGSVTMNGSTDNVPPCITANYFRGSSYRAIRSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYHKEINYENPLGMNGELALAFGDLLRKLWVPRAMPIAPRTFKTKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVISTDGITLPSTLTVTVPKCGTLKDLIGALSTSCSLREDETLLLAEIYRNKIFRVFENPSDSLGDIRDQDKVVAYRMPKDTETTPLVVFVHERSVENFGKESLFGIPLVTRLSNISCGYDVQREFMKIINPFLMRAKDVSDDYENNEGISKRPSEDDELGDTTNSCAIGNDADSIVGTDDGIHLSTDFEFYLHGMENAKLILDKPLTVTTLTRKGPEIVVVWSDKMLKMYNTSLLDSLPEVFKSQLFTKRIQESVSIYKCLEAFLKEEPLGPEDMWYCPTCKKPQQATKKLDLWRLPEVLVVHLKRFSYSRYLKNKLETFVDFPINNLDLSTYVAYGNSQSTNRYVLYAISCHYGGLGGGHYTAFVRYGDDKWYDFDDSRVEAVNEDTIKTPAAYVLFYRKV 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02618 914 Gene3D Cysteine proteinases 311 550 - -
Viun1g02618 914 CDD Peptidase_C19R 761 912 - -
Viun1g02618 914 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 324 339 IPR018200 GO:0004843|GO:0006511
Viun1g02618 914 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 261 913 - -
Viun1g02618 914 MobiDBLite consensus disorder prediction 655 671 - -
Viun1g02618 914 MobiDBLite consensus disorder prediction 655 676 - -
Viun1g02618 914 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 857 874 IPR018200 GO:0004843|GO:0006511
Viun1g02618 914 Pfam Ubiquitin carboxyl-terminal hydrolase 323 911 IPR001394 GO:0004843|GO:0016579
Viun1g02618 914 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 323 914 IPR028889 -
Viun1g02618 914 Gene3D Cysteine proteinases 614 914 - -
Viun1g02618 914 SUPERFAMILY Cysteine proteinases 321 913 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02618 Viun-Chr1 36255701 36263333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02618 768 914 Miscellaneous Gene Families AT4G31670 34.000 3.74e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02618 - K21343 gmx:100791802 1516.52