Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02570 ATGTTTGATTTAGTTACTCAAGAGCGCAAGGATCAGAGGTTAACCTTTGAGGACCTCGTTGTTGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTATCGCCTATTAGATGTATCTGGAGATAGTTTTATAACGAGGTCTGATTTGAAAACTGTTATGATCGCCATTTTTAACAATATATTATGCATAAAAGATTCTCAGGATAGATCAAGTTCACATGAAGATATTGTTAACATATTTCTGAATGCTGCAAAATTCTCCATGCATAATGAAGGGGGCACTGAGGAAACCATGTCTTTTGAAGATTTCAGAAACTGGTGTACTCATCTCCCGTCTGTGAAGAAGCTTCTTGGAAGCCTACTATTGCCACCTGGTTCAGGACGGCCTGGTTCTCAGATTCCCAAACTATTAACTTCAACGGCTATTGATTCTAACATTATACTTTTAAGAAAGGAATATGCTTGGCATATTGGAGGCGCACTCTCTCAGCATGACCTGGAAGATTGGAATCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCTTGGGCAACATTTCAAATCATGCAGGCCCAACTGTGTTAATTATTAAGGACACAGAGGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGACATGCTGATTTTTATGGAGACATGAAATGTTACCTTTTTCAACTAAATCCAGTGGCTTCTATATTCAGGCCGACTGGAGCAAACAATAATCTACAATGGTGTGCTATGAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTGAATCACTTTGGTTTGTTTGTATCAGCAAACTTTGATCAAGGACATACATTTTCTTGTACAACGTTTGGTAGCCCTTGCCTCTCCAAGACTAATCGTATATTGCCAGAAGTAATAGAATGCTGGGGAGTGACTCAAGTTGCAACACAAGACAAGCACGATGCTGTCAAAGGCACTGTTCTCGAGAGGTTCAAGGAAGATCGCAATATGCTTAAAATGGTTGGCCTTGCAAATTCCAGCGAGTAG 1074 0.3948 MFDLVTQERKDQRLTFEDLVVAKATYEKGTKDEIEEFIYRLLDVSGDSFITRSDLKTVMIAIFNNILCIKDSQDRSSSHEDIVNIFLNAAKFSMHNEGGTEETMSFEDFRNWCTHLPSVKKLLGSLLLPPGSGRPGSQIPKLLTSTAIDSNIILLRKEYAWHIGGALSQHDLEDWNLLYHSSVNGLSFNTFLGNISNHAGPTVLIIKDTEGYIYGGYASQPWERHADFYGDMKCYLFQLNPVASIFRPTGANNNLQWCAMNFSSEDIPNGIGFGGRVNHFGLFVSANFDQGHTFSCTTFGSPCLSKTNRILPEVIECWGVTQVATQDKHDAVKGTVLERFKEDRNMLKMVGLANSSE 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02570 357 SUPERFAMILY EF-hand 9 126 IPR011992 -
Viun1g02570 357 Gene3D - 1 125 - -
Viun1g02570 357 SMART 109ultra 154 321 IPR006571 -
Viun1g02570 357 ProSiteProfiles EF-hand calcium-binding domain profile. 30 65 IPR002048 GO:0005509
Viun1g02570 357 ProSiteProfiles TLDc domain profile. 153 321 IPR006571 -
Viun1g02570 357 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 96 321 - -
Viun1g02570 357 Pfam TLD 177 320 IPR006571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02570 Viun-Chr1 35848417 35852893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02570 38 356 EF-hand Containing Proteins AT5G06260 61.180 4.59e-154 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02570 - - gmx:100804508 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02570 1 35848417 35852893 Viun1g02570 1 35848417 35852893 ECH