Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02558 ATGGCAGGGGCGGAGAATAGCGACGGGAGTGGGAGTGAACGGGAATTAGCGGGAAATGGAAACAACGGGTTTTTGGAGTCTAGTGGTTCTGCTGGTAGTGAAGGGAACGACAGCGTTTCTTATGCGAACGTCTTGCGTTCGAGGAACAAGTTTGCTGACGCTCTTGTTATCTACGAGCGTGTCTTGGAGAGCGATGGTGCAAATGTGGAGGCGCTCATTGGGAAAGGGATATGCCTTCAGATGCAGAATAAGGGAAGGCTTGCGTTTGAGAGTTTTTTTGAGGCTATCAAGCTGGATCCTCAAAATGCTCGTGCTCTCACACATTGCGGCATTTTGTATAAGGACGATGGTCGCCTGGTGGAGGCTGCTGAGTCATATCAGAAGGCTTTACGAGTGGATCCTTCATACAGAGCAGCTGCTGAATGCCTTGCCATTGTGTTAACAGATATTGGTACCAACACAAAGCTTGCTGGAAACACTCAGGAAGGAATTAAAAAATATTTTGAAGCCCTCAAAGTAGATCCACATTATGCTCCTGCATACTACAATCTCGGTGTGGTCTATTCAGAAATGATGCAATATGACATGGCCCTCACCTTCTATGAAAAAGCTGCAGCAGAGAGGCCAGTTTATGCTGAAGCATATTGCAATATGGGTGTGATTTATAAAAATCGTGGTGACTTGGATTCAGCTATTTCTTGTTATGATAGGTGTTTAACTGTATCACCTAACTTTGAGATTGCAAAGAATAATATGGCTATAGCTTTGACAGATTTAGGAACGAAGGTTAAATTGGAGGGGGACATCAACCAAGGTGTGGCTTTATATAAGAAAGCTTTGTATTACAACTGGCATTATGCTGATGCCATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCCATTGTATTCTATGAACTCGCCTTTCACTTTAATCCACATTGTGCGGAAGCATGTAACAATCTCGGTGTTATATACAAAGATCGTGAAAACCTTGATAAAGCAGTAGAATGCTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCACAGTCGTTGAATAATCTTGGTGTTGTATACACTGTCCAGGGTAAAGTGGATGCTGCTGCAAGTATGATTGAGAAAGCTATCATTGCAAATCCGACATATGCAGAAGCATACAATAACCTAGGAGTTCTTTATAGGGATGCTGGCGATATAACTGGAGCAATTAATGCTTATGAGCAATGTCTTAAGATTGATCCTGATTCTCGGAATGCTGGTCAGAACCGCTTACTTGCAATGAATTACATAGATGAAGGAATTGATGACACACTTTTTGAGGTTCACAGGAACTGGGGTAGGCGATTCATGAGACTATATCCACATTACACATCATGGGTTAACTCAAAAGATCCTGACCGACCCCTTGTGATAGGCTACGTTTCGCCTGATTATTTTACCCATTCTGTCTCATATTTCATCGAAGCACCTCTTGTCTATCATGACTACTCCAATTTCAAAGTGATTGTTTATTCTGCAGTTGTCAAGGCAGATGCAAAAACCATTAGATTTAGAGAGAAAGTTACAAGGAAGGGTGGTATCTGGAAAGATATTTATGGAATTGATGAAAAGAAGGTCGCCGACATGGTTAGAGAAGATCAAGTTGATATTTTGGTAGAACTTACCGGTCATACTGCAAACAATAAATTGGGAATGATGGCATGTCGGCCTGCACCGGTTCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTGCCTACGATTGATTATAGAATCACTGATTCTCTGGCAGACCCTCCTGAAACAAAGCAGAAACACATCGAGGAGTTGGTTAGATTGCCAGAATGTTTCCTTTGTTACACCCCTTCCCCTGAGGCTGGCCCTGTTTCTGCAACTCCAGCACTTTCCAATGGCTTCATCACATTTGGTAGTTTCAACAATCTTGCTAAGATTACACCAAAGGTATTGAAGGTTTGGGCGAGGATATTGTGTGCAATTCCAAATTCCCGCCTTGTGGTAAAATGCAAACCATTTTGTTGTGATAGCGTGCGGCAAAGATTCCTTTCAACACTAGAGCAGTTAGGCTTAGAACCGCTACGTGTTGATCTTTTGCCCCTTATTCTTCTTAACCATGATCATATGCATGCCTATTCTCTAATGGACATCAGTTTGGATACATTTCCATATGCTGGAACAACAACAACTTGTGAATCTTTATATATGGGAGTTCCATGTGTCACCATGGCTGGTTCAGTACATGCACACAATGTTGGTGTTAGTCTTCTTAGAAACGTTGGGATGGAGCATTTGATAGCCAGAAATGAAGATGAGTACGTTGAATTGGCTAAGAAGTTGGCTTCTGACATTTCCTCACTACATAATTTGAGAATGAGTCTACGAGATGTGATGTCCAAGTCCCCTCTCTGTGATGGTGCAAAATTTACCTTAGGTCTAGAGTCAACTTACAGAAATATGTGGCACAGGTATTGTAGAGGAGATGTCCCATCTTTGAAACGCATGGAATTGTTAGAAGAAGTTGCTATGGGTGACTTGACAAATAAGACTTCTGAGTCATCAAGAATTGCAAACTCAAGGGAGGAGAGTCCTGGATCTGTGAAGGCCAATGGATTTGATACAATGCCCGTGTCAAAGCTTAACATAGACAGCTGCGAAGAAAACGGTGGGTCATCAAATGGCGGTAGTAAACAAGGAAAAAGAGAGGTTAATGTTGATTTTCATCCGAGAGTCCTTTTGTAG 2778 0.4197 MAGAENSDGSGSERELAGNGNNGFLESSGSAGSEGNDSVSYANVLRSRNKFADALVIYERVLESDGANVEALIGKGICLQMQNKGRLAFESFFEAIKLDPQNARALTHCGILYKDDGRLVEAAESYQKALRVDPSYRAAAECLAIVLTDIGTNTKLAGNTQEGIKKYFEALKVDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAAAERPVYAEAYCNMGVIYKNRGDLDSAISCYDRCLTVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVALYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDITGAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGIDDTLFEVHRNWGRRFMRLYPHYTSWVNSKDPDRPLVIGYVSPDYFTHSVSYFIEAPLVYHDYSNFKVIVYSAVVKADAKTIRFREKVTRKGGIWKDIYGIDEKKVADMVREDQVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHIEELVRLPECFLCYTPSPEAGPVSATPALSNGFITFGSFNNLAKITPKVLKVWARILCAIPNSRLVVKCKPFCCDSVRQRFLSTLEQLGLEPLRVDLLPLILLNHDHMHAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLRNVGMEHLIARNEDEYVELAKKLASDISSLHNLRMSLRDVMSKSPLCDGAKFTLGLESTYRNMWHRYCRGDVPSLKRMELLEEVAMGDLTNKTSESSRIANSREESPGSVKANGFDTMPVSKLNIDSCEENGGSSNGGSKQGKREVNVDFHPRVLL 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02558 925 ProSiteProfiles TPR repeat profile. 287 320 IPR019734 GO:0005515
Viun1g02558 925 ProSiteProfiles TPR repeat profile. 321 354 IPR019734 GO:0005515
Viun1g02558 925 ProSiteProfiles TPR repeat region circular profile. 178 209 - -
Viun1g02558 925 MobiDBLite consensus disorder prediction 12 35 - -
Viun1g02558 925 ProSiteProfiles TPR repeat profile. 212 245 IPR019734 GO:0005515
Viun1g02558 925 Pfam Tetratricopeptide repeat 357 382 - -
Viun1g02558 925 Pfam Glycosyl transferase family 41 642 822 IPR029489 -
Viun1g02558 925 Pfam Glycosyl transferase family 41 468 625 IPR029489 -
Viun1g02558 925 ProSiteProfiles TPR repeat region circular profile. 212 244 - -
Viun1g02558 925 Gene3D - 459 639 - -
Viun1g02558 925 ProSiteProfiles TPR repeat region circular profile. 321 353 - -
Viun1g02558 925 ProSiteProfiles TPR repeat profile. 69 102 IPR019734 GO:0005515
Viun1g02558 925 ProSiteProfiles TPR repeat profile. 178 211 IPR019734 GO:0005515
Viun1g02558 925 ProSiteProfiles TPR repeat profile. 389 422 IPR019734 GO:0005515
Viun1g02558 925 MobiDBLite consensus disorder prediction 861 917 - -
Viun1g02558 925 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY 253 451 - -
Viun1g02558 925 ProSiteProfiles TPR repeat profile. 355 388 IPR019734 GO:0005515
Viun1g02558 925 Gene3D Tetratricopeptide repeat domain 36 253 IPR011990 GO:0005515
Viun1g02558 925 SUPERFAMILY TPR-like 335 788 IPR011990 GO:0005515
Viun1g02558 925 SUPERFAMILY TPR-like 252 424 IPR011990 GO:0005515
Viun1g02558 925 SUPERFAMILY TPR-like 37 261 IPR011990 GO:0005515
Viun1g02558 925 ProSiteProfiles TPR repeat region circular profile. 103 135 - -
Viun1g02558 925 SMART tpr_5 321 354 IPR019734 GO:0005515
Viun1g02558 925 SMART tpr_5 212 245 IPR019734 GO:0005515
Viun1g02558 925 SMART tpr_5 178 211 IPR019734 GO:0005515
Viun1g02558 925 SMART tpr_5 144 177 IPR019734 GO:0005515
Viun1g02558 925 SMART tpr_5 287 320 IPR019734 GO:0005515
Viun1g02558 925 SMART tpr_5 355 388 IPR019734 GO:0005515
Viun1g02558 925 SMART tpr_5 69 102 IPR019734 GO:0005515
Viun1g02558 925 SMART tpr_5 35 68 IPR019734 GO:0005515
Viun1g02558 925 SMART tpr_5 253 286 IPR019734 GO:0005515
Viun1g02558 925 SMART tpr_5 389 422 IPR019734 GO:0005515
Viun1g02558 925 SMART tpr_5 103 136 IPR019734 GO:0005515
Viun1g02558 925 Pfam Tetratricopeptide repeat 178 206 IPR001440 GO:0005515
Viun1g02558 925 Pfam Tetratricopeptide repeat 321 354 IPR001440 GO:0005515
Viun1g02558 925 Pfam Tetratricopeptide repeat 389 421 IPR001440 GO:0005515
Viun1g02558 925 Pfam Tetratricopeptide repeat 212 245 IPR001440 GO:0005515
Viun1g02558 925 ProSiteProfiles TPR repeat region circular profile. 389 421 - -
Viun1g02558 925 MobiDBLite consensus disorder prediction 896 911 - -
Viun1g02558 925 Gene3D Glycogen Phosphorylase B; 640 814 - -
Viun1g02558 925 SMART sel1 178 209 IPR006597 -
Viun1g02558 925 SMART sel1 321 352 IPR006597 -
Viun1g02558 925 SMART sel1 287 318 IPR006597 -
Viun1g02558 925 Gene3D Tetratricopeptide repeat domain 254 442 IPR011990 GO:0005515
Viun1g02558 925 MobiDBLite consensus disorder prediction 861 877 - -
Viun1g02558 925 Pfam Tetratricopeptide repeat 103 135 IPR019734 GO:0005515
Viun1g02558 925 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 33 859 - -
Viun1g02558 925 MobiDBLite consensus disorder prediction 1 35 - -
Viun1g02558 925 ProSiteProfiles TPR repeat profile. 103 136 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02558 Viun-Chr1 35751756 35769081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02558 197 890 Glycosyltransferase AT3G11540 63.165 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02558 K09667 - gmx:100785784 1657.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02558 1 35751756 35769081 Viun1g02558 1 35751756 35769081 ECH