Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02544 ATGACGGAAGTGCTTCAGTTGCCTTCATCGTCAAGCTGTGGTGGTCTCACACCCAATGATGGGTCGCACCCAAGTTCCCTTATTAACGCTCCCACTGTGGAAGAAAGGGTGCTGCCACAGTCCCCTTTGGATTTGGAAGCTGAAGAAGAAGAAGAGGAAGAAGAAGAGAGAAAAAGGGAAAGAGAAAGGGATCAGCTTTCTATTTTGACCCTTTTGATAGCTACGTTTCGGAAGTCTCTGATTGGGTGCAGCACTACAGCTTCTTCTACTTCTTCTTCCATGGAGATTGGGTGGCCTTCCAATGTGAGGCACGTGGCTCATGTCACCTTCGATCGCTTCCATGGGTTTCTCGGTTTGCCTGTTGAGTTTGAGCCAGAAGTTCCCAGGAGGTCCCCCAGTGCTAGTGCAAATGTTTTTGGAGTTTCAACAGAATCTATGCAGCTCTCTTTTGACGCCAGAGGAAATAGTGTACCTACAATACTGCTGTTAATGCAGAGACATTTGTATGCACAAGGAGGCCTGCAGGCTGAAGGAATCTTCAGAATCAATGCTGAAAACGGTCAAGAGGAGTTTGTGAGGGAACAATTGAACAGAGGAGTTGTACCAGATGGCATTGATGTGCACTGCTTGGCAGGTCTCATAAAGGCTTGGTTCAGAGAACTACCTACTGGGGTATTGGACCCTCTCTCCCCCGAGCAGGTAATGCAATCCCAATCAGAAGAAGAATGTGCTCAGCTTGTGAGGCTTCTTCCTCCAACAGAAGCTGCCTTGCTAGATTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAGCTTGAACAAGATGAATGCACGTAATGTTGCAATGGTTTTCGCACCAAACATGACCCAAATGGCAGATCCTTTGACTGCTTTGATGTATGCAGTACAAGTCATGAATTTTCTCAAGACACTGGTCGTAAAGACACTTAAGGAAAGAGAGGAGTCTATTGTAAAATCAAATCCTGTTCCAGATCTTAATTCTTTTGACGATGATGGACACCATAGCAATTCAGAAATGCTACACAAGGTTCCAAAAGATTGCAGTGACGATGAAGAAGATACATTATTTGTCACTGCAGAGCCATCTCAACAAAGCCCTAGTCATCTTGCTGAAGATGGCTGTGAAACTGAATCCAAAAGTTTGCCGACATCTACCCAAAATTTGATTTCTGCTGGAAATAGGTTGTTGGTTGACAATTGTCCTTGCAATCTTTTGTCTCAAATTTGCTCTTTTGCAATTGGGCTTCAAGACTGTGGCCTCACCACTGGGCAGACAAAAGGGGATCCTGCAAAATTTTGCAGGAGCAAAAGCCTTCAGTTGAGTACTTATGATATGGACAAATGTTCCAAAAAGGTGATGGAACTTCCAGTAGCAGGAGCTGCAGAGAAGAACCTCGGAACTGCCATCATTGGGCGAATAAATTCAAGAACGGAGTTGGCTGAAGCTTGGCGTTGA 1482 0.4494 MTEVLQLPSSSSCGGLTPNDGSHPSSLINAPTVEERVLPQSPLDLEAEEEEEEEEERKRERERDQLSILTLLIATFRKSLIGCSTTASSTSSSMEIGWPSNVRHVAHVTFDRFHGFLGLPVEFEPEVPRRSPSASANVFGVSTESMQLSFDARGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEFVREQLNRGVVPDGIDVHCLAGLIKAWFRELPTGVLDPLSPEQVMQSQSEEECAQLVRLLPPTEAALLDWAINLMADVAQMESLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKTLVVKTLKEREESIVKSNPVPDLNSFDDDGHHSNSEMLHKVPKDCSDDEEDTLFVTAEPSQQSPSHLAEDGCETESKSLPTSTQNLISAGNRLLVDNCPCNLLSQICSFAIGLQDCGLTTGQTKGDPAKFCRSKSLQLSTYDMDKCSKKVMELPVAGAAEKNLGTAIIGRINSRTELAEAWR 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02544 493 MobiDBLite consensus disorder prediction 329 349 - -
Viun1g02544 493 PANTHER MKIAA1688 PROTEIN 1 366 IPR044785 GO:0005096
Viun1g02544 493 ProSiteProfiles CRIB domain profile. 96 109 IPR000095 -
Viun1g02544 493 MobiDBLite consensus disorder prediction 1 29 - -
Viun1g02544 493 Coils Coil 43 65 - -
Viun1g02544 493 SMART PBD_5 96 130 IPR000095 -
Viun1g02544 493 CDD RhoGAP 158 313 - -
Viun1g02544 493 ProSiteProfiles Rho GTPase-activating proteins domain profile. 141 326 IPR000198 GO:0007165
Viun1g02544 493 MobiDBLite consensus disorder prediction 367 390 - -
Viun1g02544 493 SUPERFAMILY GTPase activation domain, GAP 136 314 IPR008936 -
Viun1g02544 493 Gene3D Rho GTPase activation protein 128 328 IPR008936 -
Viun1g02544 493 SMART RhoGAP_3 155 318 IPR000198 GO:0007165
Viun1g02544 493 Pfam P21-Rho-binding domain 95 122 IPR000095 -
Viun1g02544 493 Gene3D CRIB domain 90 125 IPR036936 -
Viun1g02544 493 FunFam Rho GTPase-activating protein 5 126 319 - -
Viun1g02544 493 Pfam RhoGAP domain 158 292 IPR000198 GO:0007165
Viun1g02544 493 CDD CRIB 94 134 - -
Viun1g02544 493 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02544 Viun-Chr1 35652070 35656442 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02544 - - gmx:100783118 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02544 1 35652070 35656442 Viun1g02544 1 35652070 35656442 ECH