Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02543 ATGGAAGCAGTAGCAGGTTCCCGCCATTTCTCCACTCTTTCCCTTTCTTTCTCTCACAACAGAACCCTGCGTTCTTCTTCTGCCAAACCAGTGAAGCTCTCTCCTTCTTCCACCAACGCTTCCTTATCTTCCAGAAACTGGTTCGCGAAAGAGGTATGGGGTTGGGTGAACTCCAACTCCAAGGGTGTGGCCGTGAGAAGGGACCTGCGCGGAGTAGTGGTGAGGGCTGAAATGTTTGGCCAATTGACAAGTGGCCTTGAGACTGCATGGAACAAACTCAAAGGAGAAGAGGTTTTGTCTAAAGAGAACATTGTGGAGCCTATGCGAGATATTAGGAGAGCTCTTCTAGAAGCCGATGTTAGTCTTCCTGTTGTCAGAAGGTTTGTGCAGTCTGTCAGTGATCAGGCTGTGGGTGTTGGTGTCATTCGAGGGGTGAAACCGGATCAGCAATTGGTTAAGATTGTACATGATGAACTTGTACAATTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCCAAATCTGGTCCCACTGTCATTTTATTGGCTGGACTGCAAGGAGTTGGGAAGACAACCGTCTGTGCAAAGTTGGCAAATTATCTCAAGAAACAGGGAAAAAGTTGCATGCTGGTTGCTGGCGATGTATATAGACCTGCTGCTATTGACCAGCTTTCTATTTTGGGAAAACAGGTAGATGTGCCTGTCTATACAGCAGGTACTGATGTTAAACCTTCAGAAATTGCCAAACAAGGCTTAGAAGAGGCAAAAAAGAAGAAAATTGATGTTGTTATTGTTGATACCGCCGGTAGACTGCAGATTGACAAGACAATGATGGATGAGTTGAAAGAAGTTAAAAGGGCATTGAATCCAACAGAAGTGTTGCTAGTTGTGGATGCAATGACAGGGCAAGAAGCTGCAGCGTTAGTGACTACTTTCAATCTTGAGATTGGAATAACAGGTGCCATCTTGACAAAGCTTGATGGTGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAACTAGTAGGACGAGGGGAACGAATGGAGGATCTTGAACCTTTTTACCCTGATCGGATGGCAGGACGCATACTTGGAATGGGAGATGTTCTTTCTTTCGTAGAGAAGGCACAAGAAGTTATGCGTAAAGAAGATGCTGAAGAACTGCAAAAGAAGATCATGAGTGCAAAGTTTGATTTCAATGATTTTCTAAAGCAAACTCGTACTGTTGCCAAAATGGGTTCCGTGTCTCGTGTCATTGGAATGATTCCTGGTATGGGGAAGGTTACTCCTTCTCAGATAAGAGACGCAGAGAAGAATTTGCAGAATATGGAAGCAATGATAGAAGCAATGACCCCTGAGGAGAGGGAAAAGCCGGAACTGTTGGCAGAATCCCCTGTCAGGAGAAAAAGAGTTGCTGTTGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTAGCTCAGCTTTTCCAAATGCGTGTTCGTATGAAGAACCTGATGGGTGTAATGGAAAGTGGATCACTTCCAACACTTAGTAATCTTGAGGAAGCGCTTAAAGCGGAGGAAAAGGCTCCACCTGGCACTGCAAGGAGGAGGAAGAGATCGGAATCAAGGAGTGTATTTATGGACTCAACAACCGGAAGGCCAAGTCCTCGTGGTTTTGGGAGCAAAAGTTGA 1698 0.4523 MEAVAGSRHFSTLSLSFSHNRTLRSSSAKPVKLSPSSTNASLSSRNWFAKEVWGWVNSNSKGVAVRRDLRGVVVRAEMFGQLTSGLETAWNKLKGEEVLSKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVKPDQQLVKIVHDELVQLMGGEVSELVFAKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLSILGKQVDVPVYTAGTDVKPSEIAKQGLEEAKKKKIDVVIVDTAGRLQIDKTMMDELKEVKRALNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRKEDAEELQKKIMSAKFDFNDFLKQTRTVAKMGSVSRVIGMIPGMGKVTPSQIRDAEKNLQNMEAMIEAMTPEEREKPELLAESPVRRKRVAVDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMESGSLPTLSNLEEALKAEEKAPPGTARRRKRSESRSVFMDSTTGRPSPRGFGSKS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02543 565 Pfam SRP54-type protein, GTPase domain 177 372 IPR000897 GO:0005525|GO:0006614
Viun1g02543 565 SUPERFAMILY Signal peptide-binding domain 403 504 IPR036891 GO:0006614|GO:0008312|GO:0048500
Viun1g02543 565 MobiDBLite consensus disorder prediction 526 546 - -
Viun1g02543 565 CDD SRP_G 178 370 - -
Viun1g02543 565 MobiDBLite consensus disorder prediction 547 565 - -
Viun1g02543 565 SMART AAA_5 176 323 IPR003593 GO:0016887
Viun1g02543 565 SMART SRP54_N_2 78 163 IPR013822 GO:0005525|GO:0006614
Viun1g02543 565 FunFam Signal recognition particle 54 kDa subunit 168 361 - -
Viun1g02543 565 NCBIfam signal recognition particle protein 80 504 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Viun1g02543 565 Gene3D - 383 507 IPR036891 GO:0006614|GO:0008312|GO:0048500
Viun1g02543 565 Hamap Signal recognition particle 54 kDa protein [srp54]. 82 522 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Viun1g02543 565 Gene3D - 81 382 IPR042101 -
Viun1g02543 565 Pfam Signal peptide binding domain 403 501 IPR004125 GO:0006614|GO:0008312|GO:0048500
Viun1g02543 565 Pfam SRP54-type protein, helical bundle domain 82 159 IPR013822 GO:0005525|GO:0006614
Viun1g02543 565 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 78 520 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Viun1g02543 565 Coils Coil 440 460 - -
Viun1g02543 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 430 IPR027417 -
Viun1g02543 565 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 345 358 IPR000897 GO:0005525|GO:0006614
Viun1g02543 565 Gene3D - 167 361 IPR027417 -
Viun1g02543 565 SMART SRP54_3 177 372 IPR000897 GO:0005525|GO:0006614
Viun1g02543 565 MobiDBLite consensus disorder prediction 526 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02543 Viun-Chr1 35645085 35651413 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02543 K03106 - gmx:100782581 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02543 1 35645085 35651413 Viun1g02543 1 35645085 35651413 ECH