Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02530 ATGGCGACGAAGAAGTTGGTGAAAGCGAGAGCATTGGCAACAGTAAAACCTTCTTCTTCTTCTTCAGCGATCCCCAACCTCCCTCTACCATCTCCACCCTCAGACACACCCGTGTCCCAAGTTCACTACGCCCGCTTCCTGGACTTCTTGAAGGCCCATTGGGCCCCGCCGTTCACCCCCGACACTCTCCTCCACTTCCTGAAATCGAAGCTCCACCACCACCCTTCCTTCTCTCAATTCGACTTCCACCTCTTCACCTGGGCCTCCTCCCTCGACTCATTCCGCCACACCCACGCCACCTTCCACTGGATGGCCCGCACCCTCGCCGCCACCCACCGCCTCCCCCAGCTCCGCACCCTCCTCCACGTCATCGCCACCCACCCCTGCCCCTGCTCTCCCTCCATCTTCTCCTGCCCCCACACCCAACCCATCTTCTCCCACGCCATCCACGCCTTCTCCAAATCCTCCCAACTCCACCACGCCCTCTCCGCATTCCACTCCATGACCAAACTCATCGACTCCAAGCCAGACGTCGCCGTTTTCAACGTCCTCATCCACGCCTTCGTCAAACGCGGTAACCTAACCCAAGCCCTCCAGTTTTACCGCGACATGGTGGTTACCCACCGCGTCAAGCCTGACGTTTTCACCTTCAACATTTTGATCAGTGGTCACTGTCGGAACTCGCAGTTCGCGTTGGCGTTGGACGTGTTTCACGAGATGGGGAAAATGGGGTGTGAGCCCAATGTGGTTACTTTCAATACCTTGATTAGGGGGATGTTTAGAGAGGGGAGGGTTGAGGATGCCATTGAGATGGCTCGCGAGATGGTTCAATTAGGGTGTGAGCTTTCTTGTGTTACATGTGAAATTTTGGTTCAAGGGCTTTGTAAGGAAGGGGTTTTGCAGGCGTGTGAGTTGTTGCTGGGGTTTTCTGAAAAGAGGGTTTTGCCCAAGGGGTTTGATTGTTTTGCTTTGGTGGAGGTTTTGTGTGGGCAAGGGTGTGCTGTGAGAGCGTTGGAAGTTGTTTATGAGTTGTGGAATGGGGAGAGTGTTCCGAGTTTGGTTGCTTGCATTGCTGTGGTTGATGGGTTGAGGGTGTTGGGGAAGATCGATGAGGTGAAGAGATTGGTGGAAAGGATGCTTGATGAGGGTATGGTGCTGGATGTTGTGACTTTCAATGGTGTTCTTCGAGATATTTGCTATGCACGGAGAACCGATGAGGCAAATAGATTGATGTTACTTGCTTTGAGCAAGGGTTTGGAACCTGATGACATGACTTATAGGACTTTGGTTATAGGGTATTCGGAGGAGGGAAGGAGGGAGAAAGGAGAGTTTCTGGTGAATGAAATGTTGGATAGGGGTTTTATACCTGATCTTGCTTCATATAATAAGTTGATGAGTGGATTGTCTAATTGTAGACGCTCTACATGTCGTCAAGTAAACAAATTTGATCGCTGA 1455 0.5182 MATKKLVKARALATVKPSSSSSAIPNLPLPSPPSDTPVSQVHYARFLDFLKAHWAPPFTPDTLLHFLKSKLHHHPSFSQFDFHLFTWASSLDSFRHTHATFHWMARTLAATHRLPQLRTLLHVIATHPCPCSPSIFSCPHTQPIFSHAIHAFSKSSQLHHALSAFHSMTKLIDSKPDVAVFNVLIHAFVKRGNLTQALQFYRDMVVTHRVKPDVFTFNILISGHCRNSQFALALDVFHEMGKMGCEPNVVTFNTLIRGMFREGRVEDAIEMAREMVQLGCELSCVTCEILVQGLCKEGXVLQACELLLGFSEKRVLPKGFDCFALVEVLCGQGCAVRALEVVYELWNGESVPSLVACIAVVDGLRVLGKIDEVKRLVERMLDEGMVLDVVTFNGVLRDICYARRTDEANRLMLLALSKGLEPDDMTYRTLVIGYSEEGRREKGEFLVNEMLDRGFIPDLASYNKLMSGLSNCRRSTCRQVNKFDR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02530 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Viun1g02530 485 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 325 474 - -
Viun1g02530 485 Gene3D Tetratricopeptide repeat domain 207 308 IPR011990 GO:0005515
Viun1g02530 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Viun1g02530 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 212 IPR002885 -
Viun1g02530 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Viun1g02530 485 NCBIfam pentatricopeptide repeat 180 214 IPR002885 -
Viun1g02530 485 NCBIfam pentatricopeptide repeat 250 283 IPR002885 -
Viun1g02530 485 NCBIfam pentatricopeptide repeat 215 249 IPR002885 -
Viun1g02530 485 NCBIfam pentatricopeptide repeat 426 458 IPR002885 -
Viun1g02530 485 Gene3D Tetratricopeptide repeat domain 311 483 IPR011990 GO:0005515
Viun1g02530 485 Pfam PPR repeat 180 205 IPR002885 -
Viun1g02530 485 Pfam PPR repeat 359 384 IPR002885 -
Viun1g02530 485 Pfam PPR repeat 426 455 IPR002885 -
Viun1g02530 485 Gene3D Tetratricopeptide repeat domain 60 206 IPR011990 GO:0005515
Viun1g02530 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Viun1g02530 485 Pfam PPR repeat family 212 259 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02530 173 482 Glycosyltransferase AT1G05670 23.794 1.25e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02530 - - gmx:100796880 746.117