Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02496 ATGGAAGATGAGGATAAATACAGCATTAGTGAAGCAGATAGCAGTTACAGACAGATTGAAGGTGGGCTAGGTTCTGTTTTACCAACGGTATCTGTTGGCAAGAACGTAAAGATACCAAGTGATGAAGCTAAACCTAAGACCATTCCCCGACCTGGCACTGGGCAGAAAATTTATGAGATTGATCCATCTTTGCTAGCCCACCGTGGGCATCTTGATTTCCGTTTTGGACAATACAAAAGATTGCACGATGAAATTAACAAACATGAAGGTGGTCTGGATACATTTTCTCGTGGCTATGAAAAATTTGGCTTCATACGCAGTGCTACAGGCATTACTTACAGAGAGTGGGCACCTGGAGCCAAGTCAGCAGCATTAATTGGAGACTTCAACAATTGGAATTCAAATGCAGACGTAATGACTCGGAATGAGTTTGGTGTTTGGGAGATTTTTTTGCCAAACAATGTGGATGGTTCACCACCAATTCCTCATGGTTCTCGGGTCAAGATCCGCATGGATACTCCATCTGGAGTAAAGGACTCGATTCCTGCTTGGATCAAGTTTTCTGTACAGGCTCCTGGTGAAATTCCATATAGCGGAATATACTATGATCCCCCAGAAGAGGAAAAGTATGTGTTCAAACATCCACAGCCAAAGAGACCAAAATCACTTAGAATATACGAGTCACATGTTGGAATGAGTAGTCCGGAGCCAAAGATCAACACATATGCCAATTTTAGAGATGATGTACTACCTCGCATTAAAAAGCTTGGCTACAATGCTGTCCAGATTATGGCCATCCAAGAACATTCTTATTATGCCAGCTTTGGGTACCATGTCACAAATTTCTTTGCACCTAGCAGCCGATTTGGAACACCAGAGGACCTTAAATCTCTGATAGACAAAGCCCATGAACTAGGTCTGCTTGTTCTGATGGATATTGTACACAGCCATTCATCAAATAATACATTGGATGGGCTAAACATGTTTGATGGAACTGATGGTCATTATTTCCATCCTGGGTCACGAGGTTATCATTGGATGTGGGATTCTCGCCTTTTCAATTATGGAAGCTGGGAAGTACTAAGGTATCTACTTTCAAATGCAAGATGGTGGCTGGATGAATATAAGTTTGACGGGTTTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGGTTGCAGGTAGCATTCACTGGAAATTACAGTGAGTACTTTGGTATGGCAACTGATGTTGATGCTGTGGTTTACCTGATGCTGGCTAATGATCTCATTCATGGACTCTTCCCTGAGGCTGTTACCATTGGTGAAGATGTGAGTGGAATGCCAACATTCTGCCTTCCTACACAAGATGGTGGGGTTGGTTTTGATTATCGCCTGCAAATGGCCATTGCAGACAAGTGGATTGAGATTCTCAAGAAGCAAGATGAGGACTGGAAAATGGGTGATATTGTCCACACACTAACAAACAGAAGATGGCTGGAAAAATGTGTATCTTATGCTGAGAGTCATGATCAGGCCTTGGTTGGTGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGGCTTTAGACAGGCCATCTACACCTCGTATAGATCGTGGTATAGCATTACACAAAATGATTAGGCTTATTACCATGGGACTTGGTGGTGAAGGGTATTTGAATTTTATGGGGAATGAGTTTGGCCATCCTGAGTGGATTGATTTTCCAAGGGGTGAACAACAACTTCCTGATGGCTCAGTAATTCCAGGGAACAACTACAGTTATGATAAATGCAGGCGAAGATTTGACTTGGGAGATGCGGACTATTTAAGATATCGAGGAATGCAAGAATTTGATCGAGCCATGCAGCTTTTAGAAGAAAAGTTTGGTTTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAAGTTATAATCTTTGAAAGGGGCAACCTCGTCTTTGTCTTCAATTTTCATTGGAACAACAGCTATTCAGATTACAGAGTTGGCTGCTCAACCCCTGGGAAATATAAGATTGTCTTGGATACAGATGATGCCTTGTTTGGTGGCTTCAATCGGCTCAACCACTCTGCTGAGTACTTCACTTCTGAAGGATGGTATGATGACCGACCTCGATCCTTTCTTGTCTATGCACCTTCTAGAACAGCAGCGGTTTATGCCATTGCAGATGATGTTGAACCAGCCCTTCCAGATGAAGTTGAATCAGCCCTTGCAGATGAAGGTGAACCAGAGGCAGTTGATCCTTGA 2283 0.4249 MEDEDKYSISEADSSYRQIEGGLGSVLPTVSVGKNVKIPSDEAKPKTIPRPGTGQKIYEIDPSLLAHRGHLDFRFGQYKRLHDEINKHEGGLDTFSRGYEKFGFIRSATGITYREWAPGAKSAALIGDFNNWNSNADVMTRNEFGVWEIFLPNNVDGSPPIPHGSRVKIRMDTPSGVKDSIPAWIKFSVQAPGEIPYSGIYYDPPEEEKYVFKHPQPKRPKSLRIYESHVGMSSPEPKINTYANFRDDVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEDLKSLIDKAHELGLLVLMDIVHSHSSNNTLDGLNMFDGTDGHYFHPGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGMATDVDAVVYLMLANDLIHGLFPEAVTIGEDVSGMPTFCLPTQDGGVGFDYRLQMAIADKWIEILKKQDEDWKMGDIVHTLTNRRWLEKCVSYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGEQQLPDGSVIPGNNYSYDKCRRRFDLGDADYLRYRGMQEFDRAMQLLEEKFGFMTAEHQYISRKNEGDKVIIFERGNLVFVFNFHWNNSYSDYRVGCSTPGKYKIVLDTDDALFGGFNRLNHSAEYFTSEGWYDDRPRSFLVYAPSRTAAVYAIADDVEPALPDEVESALADEGEPEAVDP 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02496 760 Pfam Alpha amylase, C-terminal all-beta domain 639 732 IPR006048 GO:0003824|GO:0005975|GO:0043169
Viun1g02496 760 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 44 734 - -
Viun1g02496 760 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 635 735 - -
Viun1g02496 760 SUPERFAMILY (Trans)glycosidases 225 611 IPR017853 -
Viun1g02496 760 FunFam 1,4-alpha-glucan branching enzyme 204 630 - -
Viun1g02496 760 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 97 209 - -
Viun1g02496 760 PIRSF GlgB 34 740 IPR037439 GO:0003844|GO:0005978
Viun1g02496 760 Pfam Alpha amylase, catalytic domain 250 321 IPR006047 GO:0005975
Viun1g02496 760 SMART aamy 240 612 IPR006047 GO:0005975
Viun1g02496 760 CDD AmyAc_bac_euk_BE 206 621 - -
Viun1g02496 760 SUPERFAMILY Glycosyl hydrolase domain 636 733 - -
Viun1g02496 760 Gene3D Immunoglobulins 97 209 IPR013783 -
Viun1g02496 760 Gene3D - 635 739 IPR013780 -
Viun1g02496 760 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 101 184 IPR004193 GO:0004553|GO:0005975
Viun1g02496 760 CDD E_set_GBE_euk_N 109 202 - -
Viun1g02496 760 SUPERFAMILY E set domains 95 204 IPR014756 -
Viun1g02496 760 Gene3D Glycosidases 61 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02496 Viun-Chr1 35320286 35334086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02496 43 735 Glycoside Hydrolase AT5G03650 84.848 0.0 1273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02496 K00700 - gmx:100816963 1467.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02496 1 35320286 35334086 Viun1g02496 1 35320286 35334086 ECH