Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02485 ATGCCAACTCTGATGTTCAACATGTTCGCAACTCATCAGCCTCGGTTTATGGTCGTGCTATTTTTGTCCATCGAGATCATCACCTTGAGATGCAGTTCCACCACGCAAGAGCCACGCGGCTTCTCGGCCACGCCAGAGTCTTCAACGGCGTCGTTTCAGGCAGTTCTCAGTGACCCCAGCGGAAACTTTTCCCTCGGCTTCCTCCGCATGAACCGAAACCAGCTGGCACTAGCCATCCTCCATGTGGCATCCTCGGAGCCTTTCTGGGTGGCCAACCCAACCCGCGCAGCTTCCTGGTCCGACACCACGCGCCTCTTCTTCAACGGTAGTCTCGTGCTGTCGGACTCCGAAACGCGCGTTTGGTGGTCAACCGCCACAAACGGAGACCGCGCGGTGCTCCTCAACACCTCCAACTTGCAGGTCCAAGCCCAAGGCAGTCCCCTCTGGGAGAGTTTTGACTTTCCCACAAATACCATCGTCCAGGGCCAGAATTTCACCTCCAAAATGTCTTTGTTATCCTCCAACGGATTATATTCGTTGCGGTTAGGCAGCGATTTCATGGGACTGTACGAAGAAAATAAGGATTTATACTGGAAACGCACAGTACTGGAGACGAAAGCGGAGGTGCAGGAAGGTAAGGGACCGATTTACGCCCGAGTCAACGCGGAGGGTTACCTCGGGATGTATCAGACAAACGACGAGAAGCCCGCGGATGTTCAAAAGTTCAACAGCTTCCAACAGGCTGTCACAGCGGCGTCGTTTTTGTTCGTGCGGATGGAACCGGACGGGAATTTGAAAGGTTATTACTGGGACGGTTCCAACTGGCTAACTAACTACCAGGCTATTTCTGAGACCTGCGAACTCCCCCGCTCCTGCGGGTCCTACGGTTTGTGCACGCCCGGCGTGTCTGGATGCTCCTGCTTAGATAACCAGACCCGGTTCGAAGCGGGTGGGTGTTTCAACGATGTTGGTGGAGAGTTGTGTGGGGAGGAAGGGATTGGTGGGAGGGAAAGCGGGTACCGGGTGCTGAGAAGGACCGGCGTGGAGCCACCGCATAAGGAGCTCCTGAGCCACGTAACGACGTCGTCCTTGGCGGAATGCGAGGAGGTATGCGAGAAGAACTGTAGCTGTTGGGGAGCGCTGTATAACAACGGCACCGGGTTTTGCTACATGTTGGATAGTCCGATCGGAAGCATGTTGGGTACCGGGGATGCGACAAAAGTGGGGTATTTCAAAGTTAAAAAGGGGGAGGAGAAAATAAACGGGTTTGGGCGGGTTGCAGTTGTGATTACGGTTTTGGTAGTGGTTGGGATTATTGTTGTTGGGACGGGGCTTTGTGTGAGGAGATGGAAAAGGAGAAGAGGAGTGAAGGAAGAGGATTGGGCCTCGCCCGGCCCGTATAAAAATCTTGGATCTGCGAGTTTTAGATCCATCGAAATGAGCAGTAGATAG 1452 0.5393 MPTLMFNMFATHQPRFMVVLFLSIEIITLRCSSTTQELXRGFSATPESSTASFQAVLSDPSGNFSLGFLRMNRNQLALAILHVASSEPFWVANPTRAASWSDTTRLFFNGSLVLSDSETRVWWSTATNGDRAVLLNTSNLQVQAQGSPLWESFDFPTNTIVQGQNFTSKMSLLSSNGLYSLRLGSDFMGLYEENKDLYWKRTVLETKAEVQEGKGPIYARVNAEGYLGMYQTNDEKPADVQKFNSFQQAVTAASFLFVRMEPDGNLKGYYWDGSNWLTNYQAISETCELPRSCGSYGLCTPGVSGCSCLDNQTRFEAGGCFNDVGGELCGEEGIGGRESGYRVLRRTGVEPPHKELLSHVTTSSLAECEEVCEKNCSCWGALYNNGTGFCYMLDSPIGSMLGTGDATKVGYFKVKKGEEKINGFGRVAVVITVLVVVGIIVVGTGLCVRRWKRRRGVKEEDWASPGPYKNLGSASFRSIEMSSR 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02485 484 PIRSF SLG 3 424 IPR035446 -
Viun1g02485 484 ProSiteProfiles PAN/Apple domain profile. 329 416 IPR003609 -
Viun1g02485 484 Pfam PAN domain 359 399 IPR003609 -
Viun1g02485 484 Gene3D - 44 155 IPR036426 -
Viun1g02485 484 Pfam D-mannose binding lectin 89 170 IPR001480 -
Viun1g02485 484 SMART blect_4 48 156 IPR001480 -
Viun1g02485 484 Pfam S-locus glycoprotein domain 251 310 IPR000858 GO:0048544
Viun1g02485 484 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 274 IPR036426 -
Viun1g02485 484 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 455 - -
Viun1g02485 484 SMART ntp_6 336 415 IPR003609 -
Viun1g02485 484 ProSiteProfiles Bulb-type lectin domain profile. 42 157 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02485 Viun-Chr1 35205625 35207593 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02485 - - gmx:100812159 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02485 1 35205625 35207593 Viun1g02485 1 35205625 35207593 ECH