Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02453 ATGGACGCACCTCGTAAGCAGCAGGTATCGCTGAGAGGAGCAAGTGCGAAGGAGATAACGCGAGACGCTCTTCTTCAGAAGGTCTCTCAGGAAAGAGAACTTCGCAATTATGCAAAACGAGCTGCTGCTGCTGCTCTCTTCATTCAGAGAGTTTGGAGGCGCTTCAAGGTCACAAAGGCAGTTTCTCTGCAACTTCAGCAAGAGTGGGAGATAGCAGTGAATCGTTATACTGGTGTAATGACAGCAAATTGGATTTCAAACAATTTATTGAGACCATTTCTGTTCTTTATTACCCTTATCTCCACTCAGCGTGAAAAGGTCCGCTGCAAGAGAGTAGATTCTATGAAACTGTGCTTTACAGTCGTACTGGAAAGCCTGAAATCTTCTGATTCAAAGCTGAACTTTTGCTTTCTGGCAATTGGTACAACTGAAGAAAGAAGAATATGGAGATACCAGGCACGCAAGCTCACTTTTCTTAGTTTTCTTATTCTTTCAGAGTTCAGCGAACGCCCTTCGGGGTCCCAAGATATTACTGTTGTTACATCTCTTGCTATGCGTATTCTTGTAATGTTAACTGATCTGAAAGGATGGAAAGGAATTACAAATGACAACCACTTTGATGCAGATTTAGCGGTGAAAGATTTAATTCAGTTCATGGGCAGTGAGAAAAGTGGTTGTTATGTGTCTATTGGAAGATATATTAGTGCATTAGAAAATCATTCTCCCCAGTCAAAGACCATCGCCCAGGCAGATGAAAATTTTTTCATTACTGCAAGTGTAATAACTTTAGCTGTACGGCCGTTTTATCTGATAAACTATGATGCAGAAGTGCCTCATACGCTAGATTTCAACTATGCTGCTGAGCAGTATATTGTTTATCTGCTGACTATACCTTGGCTAGTGCAACATCTCCCCCTTATTCTTCTACCAGCTTTAAAGCACAAGTCTATTTTGTTTCCATGCTTCCAAACTCTATTGATTTTGAAAGAGAAAGTTTTGATGGAGATGTCAGAGTTCATCAAATCAGAGATTCCTGTCTCTTTCAAGGCTATTCCACCAGTTGGTTGGGCCCTAGCTAACATTATCTGCTTAGCAACAGTGAATGAGAATGAATCCTTCAATCAAGGTTTAGACCATGGATTGTATGTCCATGTTGTTATTACTCTATCAGAGGCTCTGCTGGCTTGTCTTGATAATATTGGGTGGGTCAGAAAGAAAAAGAAAGCCCTTCAAACTGACGGTGAAAGTTCAACACACCCAGTTGATGCAGTTCAGCATGAGGGTGAAGCGACCAATGAATCCTTAATATTGTCATACATGGATCAGTTTAGACCTGTTTGTCAGCAGTGGCATCTCAAAATTCTTTTGGCATCAATTGATAGAGATTCCATAAACAAGGCTGAGACTGTGCCATCAAGTAGCCTTGAATGTCCGGGAAATCTAGAATTGTGTGATGTTGCTCTTTTTTATTCTAACGTACTTAGAATATTTTCAGTGTTGAGTCCAATTCGTGGCTCATTATCAGTTCTCAACATGCTATCATTCACTCCTGGATTTCTTGTGAAATTGTGGAGTGTACTGGAGGGTTCCTTTTTTTCAGGAGACAAACATAATTTTGATAATTACATAAGTGAAAACAGCAAACATAAAGCCTTTGAGAAGATGCAAAAAGAAGTCAGTAAAGATGGGCCTAATAAGTGGGTCAATGTACTTCATAAAATTGCAGGTAGGTCACGAGCAGCAACAGATTGCACTGACTTTAGTAGCAGTCACAGTGAGCCTAGCCGAGCGAATGACGATTCATCAGATATATGGGACATAGAACCTATGAGGAATGGGCCGCAAGGCATTCCAAAAGATATGTTTGCTATGCTTCATATTTTCTGTGCGACCTATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGGTTCCATTCCAAATAGAGCAGCAAAGAAAAATTGCGTCTATGCTCAATACATTGGTTTATAATGGCTTATCCCATGTTGGTGGTCATCATAATAAGTCCTTAATGGATTGTGCTATCAGATGCTTACATTTACTGTATGAAAGGGATTGCAGGCACCCATTTTGTCCTCCTGCATTGTGGCTTTCTCCTGCTAGAAAAAGCCGGCCACCAATTGCTGTTGCTGCCAGAACTCATGAAGTTTTAGCAGCGAACCTGAGACATGATGATTCATCAGCTTCACTGAGTGTTGGTTCTGCTGTCACTATTGTTCCTCACGTTTTTCCTTTTGAGGAGAGAGTTGAGATGTTCCGTGAATTCATCAAGATGGATAAAGCATCTCGAAAAATGGCCGGTGAAATTTCTGAACCTGGTTCACGAGCCATTGAGATAGTAGTACGTCGGGGTCATATTGTTGAAGATGGATTTCGGCAATTAAATTCCCTTGGGTCAAGGTTGAAGTCTTCCATCCATGTATCATTTGTTAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGGTTATCTAAGGAGTTTCTGACTGACTTGTCAAAAGCAGCATTTGCTCCTGAATATGGACTATTTTCCCAAACCTCAACTTCAGACAGGCTTCTAGTTCCAACTGCTTCTGCCAGATATTTGGAGAATGGTCTTCAGATGATTGAATTCCTTGGAAGAGTAGTTGGGAAAGCTCTATATGAAGGAATATTACTTGATTACTCTTTCTCCCATGTTTTTGTACAAAAGCTTTTGGGACGATATAGTTTTCTTGATGAATTATCAACACTTGATCCAGAGCTATACCGGAATCTTATGTATGTCAAGAATTATGACGGTGATGTCACGGAGCTCTGTCTTGATTTCACAGTTACCGAAGAATCATTGGGCAAAAGGTATGTGGTTGAACTTAAGTCTGGTGGCAAAGATATTTCTGTAACGAATGAGAACAAGATGCAGTACATACATGCAATGGCAGACTACAAACTCAACCAACAGATGTTGCCCTTTTCAAATGCGTTTTATAGAGGGTTAACTGATCTTATATCTCCATCCTGGTTGAAGTTATTCAATGCTAGTGAATTTAATCAGTTGCTTTCAGGTGGCAATTATGATATTGATGTTGATGATTTGAAAAATAACACTCGATATACTGGTGGTTACAATGAGGGAAGCCGGACAATCAAGATATTTTGGGAGGTAATTAAAGGCTTTGAACAAGAGCGTTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCACCACTAACCATCCACAAGGTTGCTTGTGATGTTCCTCTTTGGGCAACGATTGGAGGACAGGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACGCTTAAGCTTCCGACATACAAACGTCCAGGCACCTTGAGAGCAAAGCTTCTATATGCTATCAGTTCAAATGCCGGGTTTGAACTTTCTTGA 3471 0.4071 MDAPRKQQVSLRGASAKEITRDALLQKVSQERELRNYAKRAAAAALFIQRVWRRFKVTKAVSLQLQQEWEIAVNRYTGVMTANWISNNLLRPFLFFITLISTQREKVRCKRVDSMKLCFTVVLESLKSSDSKLNFCFLAIGTTEERRIWRYQARKLTFLSFLILSEFSERPSGSQDITVVTSLAMRILVMLTDLKGWKGITNDNHFDADLAVKDLIQFMGSEKSGCYVSIGRYISALENHSPQSKTIAQADENFFITASVITLAVRPFYLINYDAEVPHTLDFNYAAEQYIVYLLTIPWLVQHLPLILLPALKHKSILFPCFQTLLILKEKVLMEMSEFIKSEIPVSFKAIPPVGWALANIICLATVNENESFNQGLDHGLYVHVVITLSEALLACLDNIGWVRKKKKALQTDGESSTHPVDAVQHEGEATNESLILSYMDQFRPVCQQWHLKILLASIDRDSINKAETVPSSSLECPGNLELCDVALFYSNVLRIFSVLSPIRGSLSVLNMLSFTPGFLVKLWSVLEGSFFSGDKHNFDNYISENSKHKAFEKMQKEVSKDGPNKWVNVLHKIAGRSRAATDCTDFSSSHSEPSRANDDSSDIWDIEPMRNGPQGIPKDMFAMLHIFCATYSHLLLVLDDIEFYEKQVPFQIEQQRKIASMLNTLVYNGLSHVGGHHNKSLMDCAIRCLHLLYERDCRHPFCPPALWLSPARKSRPPIAVAARTHEVLAANLRHDDSSASLSVGSAVTIVPHVFPFEERVEMFREFIKMDKASRKMAGEISEPGSRAIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLLEAGLDYGGLSKEFLTDLSKAAFAPEYGLFSQTSTSDRLLVPTASARYLENGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKNYDGDVTELCLDFTVTEESLGKRYVVELKSGGKDISVTNENKMQYIHAMADYKLNQQMLPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNYDIDVDDLKNNTRYTGGYNEGSRTIKIFWEVIKGFEPXERCMLLKFVTSCSRAPLLGFKYLQPPLTIHKVACDVPLWATIGGQDVDRLPSASTCYNTLKLPTYKRPGTLRAKLLYAISSNAGFELS 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02453 1157 ProSiteProfiles HECT domain profile. 813 1157 IPR000569 GO:0004842
Viun1g02453 1157 MobiDBLite consensus disorder prediction 585 609 - -
Viun1g02453 1157 Pfam HECT-domain (ubiquitin-transferase) 844 1157 IPR000569 GO:0004842
Viun1g02453 1157 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 6 1157 IPR044611 GO:0000209|GO:0061630
Viun1g02453 1157 SMART hect_3 807 1157 IPR000569 GO:0004842
Viun1g02453 1157 Gene3D Hect, E3 ligase catalytic domain 1032 1156 - -
Viun1g02453 1157 SUPERFAMILY Hect, E3 ligase catalytic domain 789 1150 IPR035983 GO:0004842
Viun1g02453 1157 CDD HECTc 789 1155 IPR000569 GO:0004842
Viun1g02453 1157 FunFam E3 ubiquitin-protein ligase UPL7 1032 1156 - -
Viun1g02453 1157 FunFam Putative Ubiquitin-protein ligase E3C 915 994 - -
Viun1g02453 1157 Gene3D Hect, E3 ligase catalytic domains 791 1029 - -
Viun1g02453 1157 Gene3D Hect, E3 ligase catalytic domain 915 994 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02453 Viun-Chr1 34912446 34923604 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02453 K10588 - gmx:100527169 2054.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02453 1 34912446 34923604 Viun1g02453 1 34912446 34923604 ECH