Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02450 ATGTGTAGGTTTGTTTGGCGCAAGAAGATTGAACGCGATGTTTCTCAAGGTGTGTCTATTGATACGTTTTCTGTTAAGGCCGAGAAAAAGAGACAGATAGAAAGGATGGCAGAAATTGAAAAAGTGAAAAAGAGAAGAGAGGAAAGGGCACTGGAGAAAGCACGGCACGAGGAAGAAATGGCACTGTTAGCTAGAGAACGTGCTCGAGCTGAGTTTCAGGACTGGGAAAAAAAAGAAGAAGAGTTCCATTTTGATCAAAGCAAAGTTAGGTCAGAAATTAGATTGCGTGAAGGGCGTGCCAGACCAATTGATGTCCTAACCAAGCATCTCAACGGCTCTGATGATTTGGATATAGAAATAAATGAACCATATATGGTCTTCAAGGGTTTGACTGTAAACGAAATGAACGAGCTACGTGATGACATCAAAATGCATCTGGACCTTGACAGGGCAACACCAACTCATGTAGAATTTTGGGAGGCACTCCTTCTGGTGTGTGATTGGGAGCTAGCAGAAGTGCGAAAAAAGGATGCGTTTGATCGAGCTAGAGTACGAGGAGAAGAACCTCCTGCTGAGCTGCTTGCAGAAGAAAGGGGACTGCATTCCAGTGTTGAGCCAGATGTAAAGAGGCTGTTGCAGGGGAAGACACGTGCAGAATTGGAGGCTTTACAGGTTCACATTGAATCAGAAATGCGTTCTGGTACAGCAAAGGTGGTTGAATACTGGGAAGCCATTTTAAAACATCTCCACATTTATAAAGCCAAGGCTTCTTTGAAGGAAATTCATGCTAAATTGCTACGTAAGCATTTGCAATCTCTAGAGAGACCATTGGAGGATGAAGACAAATTGGAGGATGCTAATGTTATGACACCTGACGAGGAGGAAGATACAGAGGATGACATTAAAGTCCGATCTCTAGATGAATCATTTTCACCAGAACCTATTAGAGAGGAGCAAGAAGATGAAGACGAGGCTGGATCATTTTCGCCACAGCTGTTGCATGGTGATGAAAGTGAGGAAGCTATTGACCCTGAAGAGGATAGAGCCATGCTGGAGCGGAGCCGCAAGGCTGTCTTAGAAGAGCAGCAAAGACGAGTTCAGGAAGCAATGATATCAAAGCCAGCTCCCTCTGAAGATAATTTTGAGATGAAGGCTTTAAAAGCTATGGGAGATATGGAAGATGGAGATGCTGTGTTTGGATCTGGTGCTGAAGTGAGCCTGGATTCCCAGGTTTATTGGTGGCATGACAAATACAGGCCTAGGAAGCCGAAGTATTTCAACCGTGTTCACACTGGATACGAGTGGAACAAATATAATCAGACTCACTATGATCATGACAACCCACCTCCAAAGATTGTGCAGGGATACAAGTTTAATATTTTCTATCCTGATCTTGTAGACAAGACAAAAGCCCCAACCTACACCATCGAGAAGGATGGCAGCAATGGGGAGACTTGCATTATAAGATTCCATGCTGGGCCACCGTACGAAGACATAGCTTTCCGCATCGTAAACAAAGAATGGGAATATTCTCACAAGAAGGGTTTTAAGTGCACATTTGAACGTGGAATTCTGCACGTGTACTTTAATTTCAAACGCCACCGCTACCGCAGATAA 1617 0.4391 MCRFVWRKKIERDVSQGVSIDTFSVKAEKKRQIERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVNEMNELRDDIKMHLDLDRATPTHVEFWEALLLVCDWELAEVRKKDAFDRARVRGEEPPAELLAEERGLHSSVEPDVKRLLQGKTRAELEALQVHIESEMRSGTAKVVEYWEAILKHLHIYKAKASLKEIHAKLLRKHLQSLERPLEDEDKLEDANVMTPDEEEDTEDDIKVRSLDESFSPEPIREEQEDEDEAGSFSPQLLHGDESEEAIDPEEDRAMLERSRKAVLEEQQRRVQEAMISKPAPSEDNFEMKALKAMGDMEDGDAVFGSGAEVSLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02450 538 Pfam Conserved mid region of cactin 65 262 IPR018816 -
Viun1g02450 538 Pfam Cactus-binding C-terminus of cactin protein 414 538 IPR019134 GO:0005515
Viun1g02450 538 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 4 538 - -
Viun1g02450 538 Coils Coil 37 73 - -
Viun1g02450 538 MobiDBLite consensus disorder prediction 285 301 - -
Viun1g02450 538 MobiDBLite consensus disorder prediction 277 346 - -
Viun1g02450 538 SMART CactinC_cactus_3 414 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02450 Viun-Chr1 34888994 34894824 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02450 K25058 - gmx:100780087 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02450 1 34888994 34894824 Viun1g02450 1 34888994 34894824 ECH