Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02389 ATGGGAGAGAAAAAAGAGAAGGCGAAGAATGAGGCCGGTAATACGCCTGACTCTGGAGGAAAGCAAAACGACGTACCCGCCCCTGTCGTTCTGAGAATCGAAATGCATTGCGAGGGATGCGTCAAAAAGATCAAACGCGCCGTTCGCAGTTTCAACGGTGTGGAAGACGTTAGGGCCGATCTATTAGGTAACAAGTTAACGGTTATCGGGAAGGTCGACTCTGCCGCAGTGCGAGACAAACTAGCGGACAAGACTAGGAAGAAGGTAGAAATTATTTCTCCTCAACCGAAGAAAGATTCCGGCGCCGCCAGTAAACCACCGGAGAAAAAGGTGGAAGAGAAAAAAACAGAAGAGAAGAAACCGGCAGATAAGAAAACGGAAGAAAAACCCCGAAACAGCGCGGTGGTGTTGAAGATTCGATTGCACTGTGACGGTTGCATACAGAAAATTCGAAAGATTATTCTCAAGATCAAAGGGGTTGAATCGGTTAACATAGAGGGAGGGAAAGACTTGGTGACAGTAAATGGCACAATGGAGGTGAAGGAATTGGTAGCGTATCTGAACGAGAAGCTGAAGCGGAACGTTGAGGTGGTCCCACCTAAGAAAGAGGGTGAAAAGAAAGAGGGTAAGAATGAAGAGAAGGAGAAGGAGAAAGAGAAGGAGAAAGGGAAGAAGAAAGAAGGTGGTGGTGGTATTAAGAAAGACGGTGGAGAGAAAGAAGAGGGTGCACCGAAGGTTGAGGTTAACAAAATGGAGCACTACGGGTACGCTTACCCACCTCCTCCTATGTACTGGTACGACGGATATGCACCAGGTCAAAGTAGTACTAGCGGTGGTGGTGGTGGTTACACGGTGGGGGTTCATTCAGGGTATGATGGTAATTACGGGAATTACCATGAGCAATACCATAACGGGTATGGGAACCAAGGGTACATGGTACAGCAACCACCCCCACCTCCGTTCTACTTGAACCCTTACCATCCTCCACCGCAGATGTTCAGTGATGAGAACCCCAACGCGTGTTTCGTGATGTGA 1035 0.4821 MGEKKEKAKNEAGNTPDSGGKQNDVPAPVVLRIEMHCEGCVKKIKRAVRSFNGVEDVRADLLGNKLTVIGKVDSAAVRDKLADKTRKKVEIISPQPKKDSGAASKPPEKKVEEKKTEEKKPADKKTEEKPRNSAVVLKIRLHCDGCIQKIRKIILKIKGVESVNIEGGKDLVTVNGTMEVKELVAYLNEKLKRNVEVVPPKKEGEKKEGKNEEKEKEKEKEKGKKKEGGGGIKKDGGEKEEGAPKVEVNKMEHYGYAYPPPPMYWYDGYAPGQSSTSGGGGGYTVGVHSGYDGNYGNYHEQYHNGYGNQGYMVQQPPPPPFYLNPYHPPPQMFSDENPNACFVM 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02389 344 CDD HMA 30 83 IPR006121 GO:0046872
Viun1g02389 344 MobiDBLite consensus disorder prediction 102 131 - -
Viun1g02389 344 Coils Coil 202 227 - -
Viun1g02389 344 SUPERFAMILY HMA, heavy metal-associated domain 135 195 IPR036163 GO:0046872
Viun1g02389 344 MobiDBLite consensus disorder prediction 1 27 - -
Viun1g02389 344 MobiDBLite consensus disorder prediction 85 131 - -
Viun1g02389 344 Pfam Heavy-metal-associated domain 138 195 IPR006121 GO:0046872
Viun1g02389 344 Pfam Heavy-metal-associated domain 31 84 IPR006121 GO:0046872
Viun1g02389 344 Gene3D - 25 99 - -
Viun1g02389 344 ProSiteProfiles Heavy-metal-associated domain profile. 132 195 IPR006121 GO:0046872
Viun1g02389 344 Gene3D - 130 205 - -
Viun1g02389 344 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 4 344 IPR044594 GO:0046872
Viun1g02389 344 MobiDBLite consensus disorder prediction 198 245 - -
Viun1g02389 344 SUPERFAMILY HMA, heavy metal-associated domain 30 84 IPR036163 GO:0046872
Viun1g02389 344 ProSiteProfiles Heavy-metal-associated domain profile. 26 89 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02389 Viun-Chr1 34352810 34354888 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02389 - - pvu:PHAVU_001G179100g 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02389 1 34352810 34354888 Viun1g02389 1 34352810 34354888 ECH
Viun1g02389 1 34352810 34354888 Viun7g00945 7 9267310 9269389 PCT