Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02362 ATGAACACATCCAACGGCATCATGACACAGTCGTCTTCGTCGGGAGCCACACAGTCGCCGGGGCTCAAAACCTATTTCAAAACTCTCGAGGGAAGATATAAGCTTCAATACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGAAAAACCGTTACTCAGGTAACCCTGGCACATCTCAAGGACAAGCCTGCACCGTCTACACCAACTGCGTCGTCCTCAAGTTTCAGTGCCAGCAGTGGTGTTCGGTCTGCGGCAGCTAGATTATTGGGTGGAAGCAACGGAAGCCGGGCACTTAGTTTTGTCGGAGGCAACGGTAGTAGCAAGAATAATGGAGGGAACAGTAGGATAGGTTCCATTGGAGCCTCCAGTACAAGTAGTTCAATGGCTAATCCAAATTTTGATGGGAAAGGGACGTATCTTATATTCAACGTCGGTGATGCAATTTTCATTAGCGACTTGAATTCTCAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCAGTGTGCCATGCGTTTGATCAAGATTCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACTCTGGCGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCTGCATTACAACAAAGACGGTTCAGTCAATAACAGTCGTTGTACATGCATTGCTTGGGTGCCTGGAGGTGATGGTGCTTTCGTTGTATCTCATTCTGATGGTAATTTGTACGTGTATGAGAAGAACAAAGATGGTGCTGCTGATTCTTCTTTTCCAGTTGTAAAAGATCAAACTCAATTTTCTGTTGCCCATGCACGTTACAGTAAGAGTAATCCCATAGCCAGATGGCATATATGCCAGGGTTCAATTAACAGCATTTCTTTCTCAATGGATGGAGCATACTTGGCAACTGTTGGACGAGATGGTTATTTGCGAGTGTTTGATTACTCAAAAGAACAACTTATCTGTGGCGGGAAAAGTTACTACGGTGCTTTGTTATGCTGTGCGTGGAGCATGGATGGAAAATATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACATGGATCGTGGGTGAGTGGAGTTGCTTTCGATTCATATTGGTCATCACCAAACTCAAATGACAATGGAGAGACGGTTATGTATCGTTTTGGTTCTGTTGGTCAGGATACACAATTACTTCTATGGGACCTGGAAATGGACGAAATCGTGGTGCCATTGAGACGGCCACCTGGTGGATCCCCAACATACAGTACTGGAAGCCAGTCATCACACTGGGACAATGTGGTCCCATTGGGTAGCTTGCAACCTGCTCCGAGTATGAGAGATGTTCCAAAAATATCTCCTTTGGTTGCTCACCGCGTGCATACTGAACCACTCTCTGGGTTGATATTTACCCAGGAATCTGTCCTCACTGCCTGTCGGGAGGGTCACATTAAAGTCTGGATGAGGCCAGGACTTGCTGCTGACACCCAATCAACCAACTCTGAAAACTTGTTAGCCACCTCTCTCAAGGACAAGCCTTCACTCTCAACCAAGATCACCAATTCTCCCTACAAACAATGA 1641 0.4607 MNTSNGIMTQSSSSGATQSPGLKTYFKTLEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGSSKNNGGNSRIGSIGASSTSSSMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDSKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGALHYNKDGSVNNSRCTCIAWVPGGDGAFVVSHSDGNLYVYEKNKDGAADSSFPVVKDQTQFSVAHARYSKSNPIARWHICQGSINSISFSMDGAYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHGSWVSGVAFDSYWSSPNSNDNGETVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSSHWDNVVPLGSLQPAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKVWMRPGLAADTQSTNSENLLATSLKDKPSLSTKITNSPYKQ 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02362 546 SMART WD40_4 471 508 IPR001680 GO:0005515
Viun1g02362 546 SMART WD40_4 328 367 IPR001680 GO:0005515
Viun1g02362 546 SMART WD40_4 286 325 IPR001680 GO:0005515
Viun1g02362 546 SMART WD40_4 370 422 IPR001680 GO:0005515
Viun1g02362 546 SMART WD40_4 211 257 IPR001680 GO:0005515
Viun1g02362 546 MobiDBLite consensus disorder prediction 1 21 - -
Viun1g02362 546 MobiDBLite consensus disorder prediction 106 130 - -
Viun1g02362 546 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 376 IPR001680 GO:0005515
Viun1g02362 546 Pfam WD domain, G-beta repeat 342 367 IPR001680 GO:0005515
Viun1g02362 546 Pfam WD domain, G-beta repeat 297 325 IPR001680 GO:0005515
Viun1g02362 546 Gene3D - 11 515 IPR015943 GO:0005515
Viun1g02362 546 SUPERFAMILY WD40 repeat-like 149 507 IPR036322 GO:0005515
Viun1g02362 546 PANTHER WD REPEAT PROTEIN 11 524 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02362 302 429 Miscellaneous Gene Families AT5G08390 22.656 7.05e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02362 K24741 - gmx:100782580 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02362 1 34073543 34079215 Viun1g02362 1 34073543 34079215 ECH