Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02316 ATGAGGGATTTCGTGATCCTTGGATCCTCTGTCACAACCCCTTTTCCTTCTTCTTCTTCTGCAGCACCCTATCGCTTCCCCATTAAACACTCTCTTCCAAAGCTCGCTCCTTTTTCTTCCTCTTGGAACATTTCATGCGCCCTCCAAGCACCCCTCTCTCTCAGCGCCGATTCCAAGCTCGTTGAGGAATTTGAAGTGTTTGATGAGGATGCCATTGATTCTGGGGTCGATGCTGAGGTTCTGGCCAAGATGGTTCTGTTGGGAATTCGAGGGAACAAGGTTAGGAGTGTTGTTCACACTCTCAACAGAGTGCAGGATCGCGCAGTTTCTCTAGCTTCTCATCTTAATGCCTCTTCCATCGATGCCATTGCGAAGGAGTGTTGCCGTTTGGTCACGTGCGGCCAAATTGAGGAGGCTGTCGAACTAATGGAGATTCTCACACGTTTCAAGATATCAATAAGGGGACTTGTTCAGCCGTCTGACGTAATTAAACGCTGTGTTCTTAGTCGGAACCCGATTTTAGCTGTTAGGTATGCATGTCTTCTTCCCCATGCACAGATATTGTTCTGCAATATTATATCAGAATTTGGCAAAAGGAGGGATTTGATTTCTGCTTTGAAAACATATGAGCTATCGAAGAAACACGTGGATATTCCCAATATGTACATATACCGGGCAATAATTGATGCTTGTGGTCTATGTCGTGATTACATGAAATCTAGGTACATATATGAGGATTTGCTTAATCAGAAGATCACCCCAAATATATACGTTTTCAACAGCCTCATGAATGTGAATGCTCATGATCTTAGCTACACATTAAATCTATATCAAAATATGCAGAATCTTGGTTTAAAACCAGATATGACATCTTATAACATCCTACTGAAAGCATGCTGTGTTGCTGGAAGAGTTGATCTGGCTCAAGACATCTATAGGGAACTTAAGCATTTGGAATCAGTGGGACAGCTAAAATTAGATGTCTTTACCTACAGCACAATTATAAAGGTCTTTGCAGATGCGAGGTTATGGCAAATGGCTCTAACAATCAAGCAAGACATGCTTTCTGCTGGTGTTTCTCTTAATATTGTCGCATGGTCATCATTAATCAATGCCTGTGCACATACAGGGCTTGTAGAGCAGGCAATTCAGTTATTTGAAGAAATGATTTTGGCTGGCTGTGAGCCTAATACTCAGTGTTTCAACATCATTTTAAATGCCTGTGTTGAAGCTTGCCAATATGACAGGGCTTTTCGCTTTTTTCATTCTTGGAAGGGAAAAAAGATGTTAGGGTCATTTGGTGAAGGCCGCAACAACAATATAGGACAGGAACTTGTGCATAATGTTACTACTATGCCAAGTGGCATTTCTAATTCACACATCTTGAGTATTGCTGAGAGGTTCCCTTTCACACCAACTACAACAACATACAATATTTTACTGAAGGCCTGTGGTACTGATTATTACCATGCAAAAGCATTAATCAAAGAGATGGAAACAGTAGGTCTTTCCCCTAATCAAATTAGCTGGTCAATTTTGATAGATATCTGTGGAGCATCAGCAAACGTGGAGGGTGCCATTGAGATTTTGAAGAACATGGCTGACGCTGGAATTAAACCTGATGTTATTGCATATACGACAGCCATTAAGGTTTGTGTTGAAAGTAAGAATTTTATGCAAGCATTAGCATTATATGAAGAAATGAAAAGCTACCAGATACGACCAAATTTGATAACATACAACACACTTCTGAAGGCACGCAGTAAATATGGCTCCTTACATGAGGTGCAACAATGCCTGACTATATACCTGGACATGCGAAAGGCAGGGTATAAACCCAATGACTGCTATCTGGAAGAATTGATTGAGGAATGGTGTGAGGGAGTGATACAAGATAACAGAGAGATGCAAGGAGAATTTTCTTTCAGCAATACATCTGAATTAGAGAGATCCCAAAGTCTACTTCTTGAAAAAATTGCTGCTCACCTGCTAAAGAGGGTAGCTGACATCCTATCAATTGACGTTCAAGGTCTCACAAAGGTTGAAGCTCGTTTGGTTGTTCTTGCAGTTCTTCGGATGATCAAAGAGAATTACAGTTTAGGACATTCAATAAATGACGATATCTTGATCGTCATAGGAGCTACTAAAGTAGACGAAAATCCAAATAAACGCATATTAGAAGTGCAAGATGCAATAATAAAACTTCTTAGAAATGAATTGGGGCTGGAAGTTTTTTCTGCCAGAACCAGATTAGCACTAAGTGACACACCAAAGTTAAAGCACCCCAACTTTGCAAATCTCAAAATAGGAGCCCTACCAGGAGAGGATGCATTACCCACATTAACGGGGTTTCAGACCAGGAGACCTGCAATTCTAGTGAGGTTGAAGGTCACCAGAAAATCATTATACAGTTGGTTGCATAGGAAGTAA 2430 0.4082 MRDFVILGSSVTTPFPSSSSAAPYRFPIKHSLPKLAPFSSSWNISCALQAPLSLSADSKLVEEFEVFDEDAIDSGVDAEVLAKMVLLGIRGNKVRSVVHTLNRVQDRAVSLASHLNASSIDAIAKECCRLVTCGQIEEAVELMEILTRFKISIRGLVQPSDVIKRCVLSRNPILAVRYACLLPHAQILFCNIISEFGKRRDLISALKTYELSKKHVDIPNMYIYRAIIDACGLCRDYMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRELKHLESVGQLKLDVFTYSTIIKVFADARLWQMALTIKQDMLSAGVSLNIVAWSSLINACAHTGLVEQAIQLFEEMILAGCEPNTQCFNIILNACVEACQYDRAFRFFHSWKGKKMLGSFGEGRNNNIGQELVHNVTTMPSGISNSHILSIAERFPFTPTTTTYNILLKACGTDYYHAKALIKEMETVGLSPNQISWSILIDICGASANVEGAIEILKNMADAGIKPDVIAYTTAIKVCVESKNFMQALALYEEMKSYQIRPNLITYNTLLKARSKYGSLHEVQQCLTIYLDMRKAGYKPNDCYLEELIEEWCEGVIQDNREMQGEFSFSNTSELERSQSLLLEKIAAHLLKRVADILSIDVQGLTKVEARLVVLAVLRMIKENYSLGHSINDDILIVIGATKVDENPNKRILEVQDAIIKLLRNELGLEVFSARTRLALSDTPKLKHPNFANLKIGALPGEDALPTLTGFQTRRPAILVRLKVTRKSLYSWLHRK 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02316 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 318 IPR002885 -
Viun1g02316 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Viun1g02316 809 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 269 658 - -
Viun1g02316 809 Pfam PPR repeat 329 359 IPR002885 -
Viun1g02316 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Viun1g02316 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Viun1g02316 809 Pfam PPR repeat family 362 409 IPR002885 -
Viun1g02316 809 Gene3D Tetratricopeptide repeat domain 459 657 IPR011990 GO:0005515
Viun1g02316 809 Gene3D Tetratricopeptide repeat domain 319 451 IPR011990 GO:0005515
Viun1g02316 809 Gene3D Tetratricopeptide repeat domain 186 318 IPR011990 GO:0005515
Viun1g02316 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 613 IPR002885 -
Viun1g02316 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Viun1g02316 809 Pfam Pentacotripeptide-repeat region of PRORP 196 316 IPR033443 -
Viun1g02316 809 Pfam Pentatricopeptide repeat domain 529 586 IPR002885 -
Viun1g02316 809 NCBIfam pentatricopeptide repeat 364 398 IPR002885 -
Viun1g02316 809 NCBIfam pentatricopeptide repeat 400 427 IPR002885 -
Viun1g02316 809 NCBIfam pentatricopeptide repeat 544 576 IPR002885 -
Viun1g02316 809 NCBIfam pentatricopeptide repeat 291 316 IPR002885 -
Viun1g02316 809 NCBIfam pentatricopeptide repeat 329 362 IPR002885 -
Viun1g02316 809 NCBIfam pentatricopeptide repeat 508 542 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02316 223 636 Glycosyltransferase AT1G05670 20.323 1.98e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02316 - - gmx:100794606 1343.18