Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02294 ATGAAGAACGATTTCGCCTTTGTTGAATTTAGTGATCCTCGAGATGCGGAGGATGCCAGATATAACTTGGATGGCCGTGACATTGAAGGAAGTCGTATTATTGTCGAATTTGCCAAGGGGGGTCCTCGTGGTTCCCGTGAATACTTGGGTCGGGGTCCACCTCCTGGATCTGGACGATGCTTTAACTGTGGCATCGATGGTCACTGGGCCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAATGCTACCGCTGTGGGGAAAGAGGTCATATAGAGAAGAACTGTAAGAACAGTCCCAAAAAGATGAGCAGCAGGCGTGGACGGAGTTTGTCACGATCACCCGTCAGGTCATATTCTCCTCGTCGTGGGAGAAGCAGGGATCGGAGCTACAATCGTGAGCGTAGCTACAGTCGATCGAGATCCCCTGTGAGAAGAGCAAGAAGCCCAGTTTCTGAAGATAGGTCACGGAGTCCTCGGCCCTCCAAGATAAGGGAGCATAGTGCATCACCTGAGCGTGGCAGCCCACAGAAGAAAAGTGACATATCTCCCCGTAATGAAGATAGGTTGGTGACCCAGCGAGATGGATCTGACTTCAGTGATGGTCCAAGAGGTAAAAGTAGAAGCCCTGCTAGCCCTGCAAGGAACCACCACAATGAGAGGGCTTATGAGAGCCCTAAATCTAATGGGCGTAGCCGGAGCCCCACCCGGAGCCCTAGGGATGACAGGAGCCCCATTGATGAAGATGATGACAACCATCGTCGCTCACAGTCACCTTAG 777 0.5187 MKNDFAFVEFSDPRDAEDARYNLDGRDIEGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKMSSRRGRSLSRSPVRSYSPRRGRSRDRSYNRERSYSRSRSPVRRARSPVSEDRSRSPRPSKIREHSASPERGSPQKKSDISPRNEDRLVTQRDGSDFSDGPRGKSRSPASPARNHHNERAYESPKSNGRSRSPTRSPRDDRSPIDEDDDNHRRSQSP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02294 258 SMART c2hcfinal6 59 75 IPR001878 GO:0003676|GO:0008270
Viun1g02294 258 SMART c2hcfinal6 81 97 IPR001878 GO:0003676|GO:0008270
Viun1g02294 258 Pfam Zinc knuckle 80 97 IPR001878 GO:0003676|GO:0008270
Viun1g02294 258 Pfam Zinc knuckle 59 74 IPR001878 GO:0003676|GO:0008270
Viun1g02294 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 33 IPR000504 GO:0003723
Viun1g02294 258 Gene3D - 50 78 - -
Viun1g02294 258 Gene3D - 79 109 - -
Viun1g02294 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 40 IPR000504 GO:0003723
Viun1g02294 258 SUPERFAMILY Retrovirus zinc finger-like domains 50 98 IPR036875 GO:0003676|GO:0008270
Viun1g02294 258 SUPERFAMILY RNA-binding domain, RBD 4 59 IPR035979 GO:0003676
Viun1g02294 258 ProSiteProfiles Zinc finger CCHC-type profile. 81 97 IPR001878 GO:0003676|GO:0008270
Viun1g02294 258 ProSiteProfiles Zinc finger CCHC-type profile. 59 74 IPR001878 GO:0003676|GO:0008270
Viun1g02294 258 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 140 - -
Viun1g02294 258 MobiDBLite consensus disorder prediction 93 258 - -
Viun1g02294 258 MobiDBLite consensus disorder prediction 212 226 - -
Viun1g02294 258 Gene3D - 1 48 IPR012677 -
Viun1g02294 258 MobiDBLite consensus disorder prediction 120 201 - -
Viun1g02294 258 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 50 78 - -
Viun1g02294 258 MobiDBLite consensus disorder prediction 233 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02294 Viun-Chr1 33760772 33763612 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02294 K12896 - gmx:100813237 361.303