Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02195 ATGACGGGATTTTCTCGCTCGCGCGATCACGCTTCTTCCTCTTCGCACAATTCCAACAGCAGTGGTAGCAATGTATTCAATTTGCTCGCAAGGAGAGAGATCTCACCCCGAACAAAATACGTGGCCAAGTGGCACTGGGGTGAAGCTTCTAAGTCAAAGTCTAGTCCTTATTCTCGTCCTAAGAATGAGGTTGTGAGAGATGCAAGACGGGGTCTCCTCTCGTGGGTCGAGGCTGAGTCATTGCGGCATTTGTCAGCTAAGTATTGTCCCTTATTGCCTCCTCCTCGGTCTACTATTGCAGCTGCATTTAGTTCCGATGGCAAGGTTCTTGCCTCTACACATGGTGACCATACAGTGAAGATAATTGATTGTGAAACTGGAAGATGCTTAAAGGTGTTAGTTGGCCATAGGAGAACGCCTTGGGCGGTTAGGTTCCATCCATTGCATCCACATATACTTGCGAGTGGGAGCTTGGATCAAGAAGTTCGTTTATGGGATGCCAACACATCAGAGTGCATAATATCTCATCAGTTCTACCGCCCCATTGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTGCTGTTGCATCTGGCCACAAGTTGTACATATGGCACCACAGCAAAAGAGGTGAAGCATCCTCTCCTATATTTGTGTTGAAGACAAAGCGCTCACTTCGGGCTGTGCATTTTCACCCACATGCCGCACCATATCTTTTAACTGCGGAGGTCAATGATCTTGACTCTTCAGATTCCTCCATGACAGAGGCAACATCTCTTGGCTATTTACAATATTCTCCGCCTGCTGTTTTTGTCACAAATATTCAGCCTACAGAACATATTAGTTTGTCCAGCGAACTACCTTATGTGTCATTACCTTTCTTTTTCATGCCCTCATACACTCTTGATGAGTCAAGAACAGAACTACAACATTCTAGTCATGACGTGGGCTCAAGTAGCATGCAAATTGAGTCTTCTGCCGTGGTACAGTTACAAACAGATACAAGTGCAACAGAGCAATATGAGGCCACAGTGTCTCCCATGGATACATTCTCTGAGATGCCCACTAGTTCTCAAACTGGTACAGAATATCCCGCCCATACTGCTTTCTCTAATGGAATGGGAATTGGCCTCAGTAATCTCACTATGGATGGTATGGAGACTGATGAAACCAGACCTGCTGAAGGAAGCCAACATGGAAACTCTACTAATACCTATTCTTTTAATGGTGTGCTACATGGACTGTCTAGGCAAACTGCCAACCGTGGGGTTCCCTCTGAGTTGGGTCAATTTAACCAGTTTTTTCCTTCTAGTTCAAGAGATTCAAGTGCATGGGAGTTGCCTTTTCTCCAAGGATCTCTAATGAGTCAAAGTCAAGTTGGTGTTCCTTCAATGCTTCCTCACATGGGTGCTAGTCGTGACATTCTAGCTCAACAGATTGGTTCTTCCACAGTGCCATCTAATCTTTCCAGTTCTAATAATGATGCAGCAATGCCATCTTCAGCAATAACTGGCAGCATCAGCATACCAGGTTCTTCAACGAGATCAGGTTTACGGAATCATTTTTCACAATCCCGTCAACCTGTATCTGAATCCGGCAATCTTGCTGTTTCTATTAATAATCCACATGATGGATCCGATATCCAAACGATAATGAGTCGAATTCAATCAGAACTTGCCGCTACATCAGTGGCTGCTGCAGAGTTGCCTTGCACTGTGAAGTTAAGAGTGTGGTCACATGACATAAAAAATCCTTGTGTCCCACTTAATGCCGACAGATGTCGTCTAACCATACCACATGCTGTCCTCTGCAGCGAGATGGGAGCTCATTTTTCACCATGTGGTAGATTTTTGGCCGCCTGCGTTGCATGTATGCTTCCTCATATAGAGGCTGATCCAGGCTTACAAACTCCAGCACACCAAGAGCCCGGTGTTGCAACATCACCAACCCGACATCCAATCTCAGCACACCAAGTTATGTATGAGTTGCGGATATATTCCCTTGAGGAGGCAACATTTGGGTTGGTGCTTGCATCACGGGCAATTAGAGCAGCTCATTGTCTGACATCAATTCAGTTCTCTCCTACATCTAAGCACATACTACTTGCCTATGGTCGACCTCATGGTTCTCTTCTTAAAAGTATTGTGATTGATGGAGAAACAACATTACCTATATACACAGTACTCGAGGTATACAGGGTGTCAGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGACGGGGTCAATGTGGCATGCTTTCACCCTTTTGCTGGGGGAGGACTAGTTTACGGAACAAAGGAAGGAAAGCTTAGGGTCCTCCAGTATGACGGTGCTCATGCAGTGAATGGCAACGGACCAAGTTACTTTCCTGAGGAGACCATCATTGGAGTCAGTCAGTGA 2406 0.4534 MTGFSRSRDHASSSSHNSNSSGSNVFNLLARREISPRTKYVAKWHWGEASKSKSSPYSRPKNEVVRDARRGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSSDGKVLASTHGDHTVKIIDCETGRCLKVLVGHRRTPWAVRFHPLHPHILASGSLDQEVRLWDANTSECIISHQFYRPIASIAFHAKGEIIAVASGHKLYIWHHSKRGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYSPPAVFVTNIQPTEHISLSSELPYVSLPFFFMPSYTLDESRTELQHSSHDVGSSSMQIESSAVVQLQTDTSATEQYEATVSPMDTFSEMPTSSQTGTEYPAHTAFSNGMGIGLSNLTMDGMETDETRPAEGSQHGNSTNTYSFNGVLHGLSRQTANRGVPSELGQFNQFFPSSSRDSSAWELPFLQGSLMSQSQVGVPSMLPHMGASRDILAQQIGSSTVPSNLSSSNNDAAMPSSAITGSISIPGSSTRSGLRNHFSQSRQPVSESGNLAVSINNPHDGSDIQTIMSRIQSELAATSVAAAELPCTVKLRVWSHDIKNPCVPLNADRCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPAHQEPGVATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSKHILLAYGRPHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDGVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVNGNGPSYFPEETIIGVSQ 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02195 801 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 596 789 - -
Viun1g02195 801 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 171 - -
Viun1g02195 801 MobiDBLite consensus disorder prediction 1 22 - -
Viun1g02195 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 175 IPR001680 GO:0005515
Viun1g02195 801 FunFam Activating molecule in BECN1-regulated autophagy protein 80 260 - -
Viun1g02195 801 ProSitePatterns Trp-Asp (WD) repeats signature. 153 167 IPR019775 -
Viun1g02195 801 SMART WD40_4 85 123 IPR001680 GO:0005515
Viun1g02195 801 SMART WD40_4 126 166 IPR001680 GO:0005515
Viun1g02195 801 SMART WD40_4 169 206 IPR001680 GO:0005515
Viun1g02195 801 SMART WD40_4 736 776 IPR001680 GO:0005515
Viun1g02195 801 SUPERFAMILY WD40 repeat-like 100 242 IPR036322 GO:0005515
Viun1g02195 801 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 20 796 - -
Viun1g02195 801 Pfam WD domain, G-beta repeat 127 166 IPR001680 GO:0005515
Viun1g02195 801 Gene3D - 97 263 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02195 Viun-Chr1 33031958 33040082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02195 100 267 Miscellaneous Gene Families AT5G08390 25.414 9.73e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02195 K17985 - gmx:100817857 1395.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02195 1 33031958 33040082 Viun1g02195 1 33031958 33040082 ECH