Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02166 ATGGCGTCGTCATATCCTGGTTCCGTGAGTGCAACACAGGTTGGCTCCTACTTTGTCGGACAGTACTATCAGATTCTCCGCCAGCAGCCGAATCTCGTTCACCAGTTTTACTCTGATTCCAGCAGCATGATTCGTGTCGATGGAGACTCCATTGAATCTGCGCAAGATGTGGTGCAAATTCATTCAATTGTTTCATTACTGAGTTTCACTTCGATTGAGATCAAGACAATCAATTCTCTGGACTCTTGGGATGGAGGTGTGCTTGTCATGGTCTCAGGTTCTGTGAAGCTAAAGGATATCACTGGGAGGCGGAAGTTTGTTCAAACATTCTTTCTCGCTCCTCAAGAGAAGGGTTACTTTGTTCTGAATGATATTTTTCATTTTGTGGAAGAAGGTGTTACATACCCAAATATGATACCAGTGGCGTCTGAAGCAATCGATAATCAGCCGCATGTGTCTGCATCTCTTGCAGAGCCACCAGACTACAGTTTAGAGGAAGAAGCTAGGGACTATGTAAACTCAGTTCATATTGACGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCACCACCAGCAGATCCATGAAGATCTTGAAACCGAAATAGTTGTGGAGGAAACTTCTGCACAGGAGGCATCTCCACCAATTCACAATGTTGCTCATACTGTCCAAGAACCCCCTGCAGCTCTTGTGGAAGAGTCTTTTGAAGAGCCTCCTAAGAAAACTTACGCTTCTATTTTACGAGTCTCCAAAGGGCTGCCTATGTTATCAGCTGCTCCACAGCATGTTCCCCAATACACCTTTAAAAGTGCTCCACCTCCTTCAGAGGTGAACCATGTAGCACAGCCTGTTATTCAGCAGTCGAGCCCTGCATCTATGTATGTCCCTGAATCTGGGTCTGAGCCCGCAGATGAAGGCTATGGACTAGAAGATGAAGGTGAAGTAACCTCTGTCTATGTGAGAAACTTGCCTGCTAACGTTACTGAAGCAGAGATTGACCAGGAATTTAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTCATCAGGGTTAGAAAGGAAATTGGAGTGTGCTATGCATTTGTGGAATTTGAAGATATCGTTGGTGTTCAAAATGCACTTCAGGCTTCTCCAATTCAGTTAGCTGGAAGACAAGTATACATAGAAGAGCGGAGGCCAAACAGTGGCACTGCAGTTCGAGGAGGAAGAAGGGGAAGAGGCAGAGGCAGTTATCAGGCAGATGCTCCGAGAGGGCGTTTTGGTGCAAGGAACATGGGAAGGGGAAGTAATCTGGATAATTCAGACTACTCGAGACTAAGAGGAGATGGTTATCTTCAGCGTAGTTCACGATGA 1353 0.4538 MASSYPGSVSATQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDSIESAQDVVQIHSIVSLLSFTSIEIKTINSLDSWDGGVLVMVSGSVKLKDITGRRKFVQTFFLAPQEKGYFVLNDIFHFVEEGVTYPNMIPVASEAIDNQPHVSASLAEPPDYSLEEEARDYVNSVHIDDDPVDKYSLPEHHQQIHEDLETEIVVEETSAQEASPPIHNVAHTVQEPPAALVEESFEEPPKKTYASILRVSKGLPMLSAAPQHVPQYTFKSAPPPSEVNHVAQPVIQQSSPASMYVPESGSEPADEGYGLEDEGEVTSVYVRNLPANVTEAEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIVGVQNALQASPIQLAGRQVYIEERRPNSGTAVRGGRRGRGRGSYQADAPRGRFGARNMGRGSNLDNSDYSRLRGDGYLQRSSR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02166 450 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 10 441 IPR039539 -
Viun1g02166 450 Gene3D - 5 132 - -
Viun1g02166 450 MobiDBLite consensus disorder prediction 392 450 - -
Viun1g02166 450 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Viun1g02166 450 CDD RRM_SF 318 389 - -
Viun1g02166 450 FunFam Nuclear transport factor 2 family protein 305 444 - -
Viun1g02166 450 SMART rrm1_1 317 389 IPR000504 GO:0003723
Viun1g02166 450 CDD NTF2 10 130 IPR018222 -
Viun1g02166 450 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 381 IPR000504 GO:0003723
Viun1g02166 450 SUPERFAMILY NTF2-like 10 129 IPR032710 -
Viun1g02166 450 SUPERFAMILY RNA-binding domain, RBD 313 421 IPR035979 GO:0003676
Viun1g02166 450 Gene3D - 300 430 IPR012677 -
Viun1g02166 450 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723
Viun1g02166 450 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Viun1g02166 450 FunFam Nuclear transport factor 2 family protein 5 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02166 Viun-Chr1 32835801 32841634 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02166 - - gmx:100787900 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02166 1 32835801 32841634 Viun1g02166 1 32835801 32841634 ECH