Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02159 ATGGCAGATAGTGAATCCGTTGTTACCGAAGCATCCGCTCATTCCGGTGCGGAGGCATATGCTTCGGCTGGTTATGTGGAGTCTGGAACAAATCCTGCTGTCGAGGCAGGTTCTACTGCTGATCAACCTTCTGGAGAAGGAGCTCAGTCCACTTCAACCTATGGATTTGGTTATTCTAATACTGGTGATGTGAATTCTTATGCTGGGGATCCGAATTCTGTTCTACAACAATCCCAATTCAATGCAACTGGTGATACCAAGCCAGCTGGTGGAGTGCCTGATGCTAACGAGGCCTCTGCTGGGGTTGGAAGCACTGCTGCTGAGCCTGCTCTGGCTTCTGACTACAGTTCATCTATCAATGGTGGTGTAGTCGGTTCAGTGACGAATGTTGGCGGACTTGAAAACGGGAATGCATTGGAAAACATTGACGGGTCAGCTGATGAAAAACAACTCGCAGATGGCTACGCAGCTGCCTTGTCTGCTGAGGAAGATCGACTATGGAATATTGTAAGAGCTAATTCTTTAGACTTCAGTGCCTGGACTTCCTTGATTGAAGAGACAGAGAAGGTAGCCGAGGACAATATTCTGAAGATTCGAAGAGTTTATGATTCCTTTCTAGCAGAATTTCCATTGTGCTATGGTTATTGGAAGAAGTATGCTGACCATGAGGCACGACTTGGCTCTATTGATAAAGTTGTTGAGGTGTATGAGCGTGCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAGTACATATGGCGATCCGGACACTGTTCGTAGGCTTTTTGAACGAGGATTGGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTACATGCAGCAGGACTGGGCTCGCCTTGCTATAATTTACACCAGAATATTAGAGAATCCAAATCAACAGTTAGATCGGTATTTCAGCAGCTTCAAAGAGTTAGCTGGAAACCGACCTTTGTCAGAGTTACGAACTGCTGAAGAAGCTGCTGTAAGTGTTGCTTCAGAGGCTACTGGACAAGGTACTGAAGGAGAAGTTCATCCTGATGGTGCAGAGAAGTCTCCTAAATCTGTAAGTGCTGGCTTAACAGAAGCAGAAGCGTTGGAGAAGTATATCGCCATTAGAGAAGAGATCTATAAAAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCTATCCGAAGGCCCTATTTTCATGTACGGCCTCTCAATGTTGGAGAGCTCGAAAATTGGCACAACTATCTAGATTTTTTGGAAAGGGAAGGTGACTTAAGCAAGATTGTCAAGTTGTATGAGAGGTGTGTCATTGCATGTGCCAATTATCCCGAGTATTGGATACGCTATGTTCTCTGTATGGAAGCCAGTGGAAACATGGATCTTGCAAATAATGTTCTTGCCCGAGCCACCCAAGTCTTTGTTAAGAGACAACCAGAGATACATCTTTTTTGTGCCCGGTTTAAGGAGCAGAATGGAGATATAGATGGTGCTAGAGCTGCCTATCAACTTGTGCATACTGAAACTTCCCCTGGTCTTCTTGAAGCAATAATCAGGCATGCCAATATGGAACGCCGATTGGGAAAAATGGAGGATGCCTTCTCCTTGTATGAACAGGCCATTGCTATTGAGAAAGGAAAAGAACATTCACAAACATTGCCGATGTTGTTTGCTCAGTATTCTCGATTTGTTTATTTGGCTTCTGGGAATGCAGAGAAGGCAAGACAGATTTTAGTTGAGGGGCTGGAGAATGTTTTGTTGTCAAAACCACTGCTTGAGGACCGGAGTTCGAGACACATGATTGGCACCGGATGTGAGTCTCATGGTCTGTATCATCTTCGTTCTCCTTCACATGTTGGCGCGGCTATGGAATCACCATCCCTTCTTCATGCACAATTTGGTCATCCCAGCCTTGCCAAACTGCAACAACTTGTCCCCAGCTTGTCCAAGTTATCTAGTTTGTCGTGTGAGTCTTGTCAATTAGGAAAGCATAGTCGTAGTTCGTTTCCTTGTAGTGTCTCACAACGAGCTTTGTCCCCTTTTGCATTAGTTCATTCGGACATTTGGGGACCTAGTCGTGTTAAGTCTACTTTAGGTTTTCAATATTTTGTTACTTTTATTGATGATTATTCAAGATGTACTTGGTTATATTTAATGAAAAATCGTTCTGAGTTGTTCTCTATTTTTCAATCATTCTTTCATGAAATTAAAACACAGTTTGGGGTTTCTATTCGAAATTTGCGGAGTGATAATGGTCGTGAATATCTCTCTCAATCCTTCAAACATTTTATGGCTTCTCAGGGCATTCTTCATCAAACATCATGCGCTTATACACCCCAACAAAATGGAGTGGCTGAGCGCAAGAATAGGCACCTTATTGAAACAACTCGCACTCTTTTAATTCATGGTGCAGTTCCTTCACATTTTTGGGGTGATGCGGTTCTTACTGCTTGTTATCTTATTAATCGCATGCCTTCTTTAGTCTTGCATAACCAAGTTCCTCATTCTATTTTATTTCCTCACGACCCTCTTCACCCTTTACCTCTTAAAGTCTTTGGGTCCACATGTTTTGTTCATGATTTTAGTCCTGGCTTGGATAAGTTGTCTCCGAGAGCCCACAAATGTGTCTTCTTAGGATTCCCCCGCTCACAAAAAGGGTATAAGTGTTTCTCTCCTTCCCTCAATCGTCATTTTATCTCCGCTGATGTCACCTTTGACGAGTCTTCTTTTTACTTCACACACCCCTCTTCTCGTTGTGAGCCACCATCTACTACTATAGATATCCCTGTTGTGTGTGATCCTCCTAGTGTGCCCACTTCCAGTGCCACCTCGGATTCTCCTCAGCCACCTCCGAGTGTACCTATTGCGGATAGACCACCTCTTCAGGTTTATAGCAGAAGACATCGTTGCCAACCACCAACTCATGACTCACATCAAGTGCCGAGTTATTTGTCTCCTCCGGTTCCAACAACTGAGTCTGATCTTCCCATTGCCCTTCGTAAAGGTATGCGTTCTACCCGTAATCATTCTCCTCATTATGCTGCTTTGAGTTATCATAGAATCTCTCCATCTTTCTATACATGCCTTTCGTCTATTTCCTCTTTGTCAATTCCAAAATCTTTAGGTGATGCATTAGCCCACCCTGGTTGGCGTCAGGCCATGCTTGATGAATTGAGTGCTCTCAGGCATAGTGGAACATGGGATCTTGTTCAATTACCATCCGGGAAATCTGTTGTTGGTTGCAGGTGGGTCTATGCTATCAAAGTTGGCCCTGATGGCACTGTTGACCGTCTCAAAGCTCGCCTTGTTGCCAAAGGTTACACACAGATCTTTGGTTTGGATTATGGTGATACTTTTTCTCCAGTGGCCAAGATGGCATCTGTTCGCTTATTCATTGCCATGGCTGCTCTTCGCCAATGGCCTCTTCACCAACTTGATGTAAAAAATGCATTCCTCAATGGCGATTTGAATGAAGAAATTTATATGGAGCAACCTCCGGGTTTTGTTGCTCAGGGGGAGTCTTCTGGATTGGTTTGTCGTCTTCACAAATCTTTATATGGCCTAAAGCAGTCTCCTCGGGCCTGGTTTGGAAAATTCAGTAGTGTTGTTCAACAATTTGGCATGTCTCGCAGTGAAGTGGATCATTCAGTTTTTTATCGTCACTCCAGTGCTGGATGTATCTACTTAATAGTGTATGTTGATGACATTGTTCTCACAGGAAGCGACAACCTTGGCATCTCCCTCTTAAAGCAACATCTTTGTCGTCATTTTCAGACCAAAGATCTTGGAAAACTCAGGTATTTCTTGGGTATTGAAGTAGCACAATCCAATAGTGGTATTGTCATATCTCAGAGGAAATATGCATTGGATATTCTGGAGGAAACTGGATTAATGAATTCTAAAGCAGTAGAAACACCCATGGATCCTAATATTAAACTTCTACCTAAACAGGGGGAGCCTTTCTCAGATCCTGAACAGTACAGACGGTTAGTTGGAAAGTTGAATTATCTTACTGTTACTCGTCCTGATATTTCCTTTGCTGTTAGCGTGGTGAGTCAATTCCTTAATTCCCCATGTGAAGAACATTGGAATGCAGTTATTCGCATATTAAAGTATATCAAAAGCTCTCCTGGAAAAGGTTTACTATATGATTCCAACTCTGATACAAAAGTTGTATGTTATTCAGATGCTGACTGGGCAGGATCTCCTTCCGACAGAAGATCTACTTCCGGATATTGTGTCTCAATTGGTGGTAATTTGATCTCTTGGAAGAGCAAGAAACAAAGTGTTGTGGCAAGATCTAGTGCAGAAGCAGAATATAGAGCTATGGCTTTAGCCACATGTGAACTTGTTTGGCTTAAGCAATTGCTTCAAGAATTGCAATTTGGAGATGTCACTCAAATGACACTCATATGTGACAATCAGGCTGCTCTTCATATTAGCTCTAATCCTGTCTTTCATGAGAGGACCAAACACATTGAAATTGACTGTCACTTCATTCGAGAAAAAATCCTATCCGGGGACATCAAGACCGAGTTTGTCAATTCAAGTGATCAATTAGCAGATATTTTCACTAAGTCCCTTCGAGGACCTAGAATTGATTATCTTTGTAACAAGCTTGGTACATACGATTTGTATGCACCAGCTTGA 4698 0.4261 MADSESVVTEASAHSGAEAYASAGYVESGTNPAVEAGSTADQPSGEGAQSTSTYGFGYSNTGDVNSYAGDPNSVLQQSQFNATGDTKPAGGVPDANEASAGVGSTAAEPALASDYSSSINGGVVGSVTNVGGLENGNALENIDGSADEKQLADGYAAALSAEEDRLWNIVRANSLDFSAWTSLIEETEKVAEDNILKIRRVYDSFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAIIYTRILENPNQQLDRYFSSFKELAGNRPLSELRTAEEAAVSVASEATGQGTEGEVHPDGAEKSPKSVSAGLTEAEALEKYIAIREEIYKKAKEFDSKIIGFETAIRRPYFHVRPLNVGELENWHNYLDFLEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGNMDLANNVLARATQVFVKRQPEIHLFCARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIRHANMERRLGKMEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVEGLENVLLSKPLLEDRSSRHMIGTGCESHGLYHLRSPSHVGAAMESPSLLHAQFGHPSLAKLQQLVPSLSKLSSLSCESCQLGKHSRSSFPCSVSQRALSPFALVHSDIWGPSRVKSTLGFQYFVTFIDDYSRCTWLYLMKNRSELFSIFQSFFHEIKTQFGVSIRNLRSDNGREYLSQSFKHFMASQGILHQTSCAYTPQQNGVAERKNRHLIETTRTLLIHGAVPSHFWGDAVLTACYLINRMPSLVLHNQVPHSILFPHDPLHPLPLKVFGSTCFVHDFSPGLDKLSPRAHKCVFLGFPRSQKGYKCFSPSLNRHFISADVTFDESSFYFTHPSSRCEPPSTTIDIPVVCDPPSVPTSSATSDSPQPPPSVPIADRPPLQVYSRRHRCQPPTHDSHQVPSYLSPPVPTTESDLPIALRKGMRSTRNHSPHYAALSYHRISPSFYTCLSSISSLSIPKSLGDALAHPGWRQAMLDELSALRHSGTWDLVQLPSGKSVVGCRWVYAIKVGPDGTVDRLKARLVAKGYTQIFGLDYGDTFSPVAKMASVRLFIAMAALRQWPLHQLDVKNAFLNGDLNEEIYMEQPPGFVAQGESSGLVCRLHKSLYGLKQSPRAWFGKFSSVVQQFGMSRSEVDHSVFYRHSSAGCIYLIVYVDDIVLTGSDNLGISLLKQHLCRHFQTKDLGKLRYFLGIEVAQSNSGIVISQRKYALDILEETGLMNSKAVETPMDPNIKLLPKQGEPFSDPEQYRRLVGKLNYLTVTRPDISFAVSVVSQFLNSPCEEHWNAVIRILKYIKSSPGKGLLYDSNSDTKVVCYSDADWAGSPSDRRSTSGYCVSIGGNLISWKSKKQSVVARSSAEAEYRAMALATCELVWLKQLLQELQFGDVTQMTLICDNQAALHISSNPVFHERTKHIEIDCHFIREKILSGDIKTEFVNSSDQLADIFTKSLRGPRIDYLCNKLGTYDLYAPA 1565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02159 1565 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1082 1323 IPR013103 -
Viun1g02159 1565 Gene3D - 688 868 IPR036397 GO:0003676
Viun1g02159 1565 PANTHER GAG-POL-RELATED RETROTRANSPOSON 685 1563 - -
Viun1g02159 1565 FunFam Putative pre-mrna-processing factor 39 168 338 - -
Viun1g02159 1565 ProSiteProfiles Integrase catalytic domain profile. 692 858 IPR001584 GO:0015074
Viun1g02159 1565 MobiDBLite consensus disorder prediction 349 373 - -
Viun1g02159 1565 Gene3D Tetratricopeptide repeat domain 168 334 IPR011990 GO:0005515
Viun1g02159 1565 Pfam Integrase core domain 696 795 IPR001584 GO:0015074
Viun1g02159 1565 Gene3D Tetratricopeptide repeat domain 420 611 IPR011990 GO:0005515
Viun1g02159 1565 SUPERFAMILY TPR-like 170 601 IPR011990 GO:0005515
Viun1g02159 1565 SUPERFAMILY Ribonuclease H-like 696 863 IPR012337 -
Viun1g02159 1565 MobiDBLite consensus disorder prediction 32 56 - -
Viun1g02159 1565 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 419 624 - -
Viun1g02159 1565 SMART hat_new_1 440 472 IPR003107 GO:0006396
Viun1g02159 1565 SMART hat_new_1 509 542 IPR003107 GO:0006396
Viun1g02159 1565 SMART hat_new_1 474 507 IPR003107 GO:0006396
Viun1g02159 1565 SMART hat_new_1 299 332 IPR003107 GO:0006396
Viun1g02159 1565 SMART hat_new_1 544 579 IPR003107 GO:0006396
Viun1g02159 1565 SMART hat_new_1 262 297 IPR003107 GO:0006396
Viun1g02159 1565 SMART hat_new_1 227 259 IPR003107 GO:0006396
Viun1g02159 1565 SMART hat_new_1 193 225 IPR003107 GO:0006396
Viun1g02159 1565 Pfam GAG-pre-integrase domain 635 680 IPR025724 -
Viun1g02159 1565 MobiDBLite consensus disorder prediction 29 56 - -
Viun1g02159 1565 MobiDBLite consensus disorder prediction 952 1006 - -
Viun1g02159 1565 SUPERFAMILY DNA/RNA polymerases 1080 1514 IPR043502 -
Viun1g02159 1565 CDD RNase_HI_RT_Ty1 1408 1544 - -
Viun1g02159 1565 MobiDBLite consensus disorder prediction 991 1005 - -
Viun1g02159 1565 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02159 Viun-Chr1 32814861 32826725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02159 1032 1563 Receptor kinase-like Gene Family AT4G23160 47.026 2.67e-157 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02159 K13217 - gmx:100787373 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02159 1 32814861 32826725 Viun1g02159 1 32814861 32826725 ECH