Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02116 ATGGAGCGGTTGAAGCTGGCGCAACTGGGGGAGAGGCTGAAGACGGGTGGGGCCCAGATGGGGCGAATGGTGAGCGGCAAGGTGAAGGAGATGCTGCAGGCCCCCACGCCGGAGTCCAAGATGGTCGACGAGGCCACGCTGGAAACCATGGAGGATCCTAATTGGGGCATCAATCTCAGGATATGTGCCATGATCAACTCCGACCAATTTAACGGCTCCGAGGTTGTTAAGGCCATCAAGAGGAAGATCAACCACAAGAACCCTCTGGTTCAGACTCTTAGCCTCGACCTCTTGGAAGCCTGCGCCATGAACTGCGACAAGGTCTTCTCCGAAATCGCTTCCGAGAAGCTTCTAGATGACCTCGTTCGCTTGATTGATAACCCGCAGGCCCACCACAGCACTCGACGTCGGGCCTTCCAGTTGATTCGGGCCTGGGGCGACTCCGAGGATCTTGCTTATCTTCCCGTCTTTCGTCAAACTTATATGAGATTGAAAGAAGGGAGGGATGATCCACTTGACATGGCGGGAGGAAATTCACCATCTATTCCGTATGCCTCAGAGTCATATGCACATCAATATCCTGTAGATCCCCCTGAAAGATACCCAATTCCTGAAGCTGAACTAGCTATCGATGATCCAGCGGCTTTCTCTTCTAATTACCAACACATATCTGTTGAGGAGAAGAAAGAGCATCTAGTGGTTGCTCGGAATAGTCTCGAATTGCTTTCTAGCATATTGAATTCTGAGGCTGAGCCAAAACCTTTGAAGGAAGATTTAACTGTGAGCTTGTTGGGCAAGTGCAAGCAATCACTCTCTATCATCAAGGGGATTGTGGAAAGCACTACAGATGATGAAGCAACGCTTTTTGAGGCTTTATATCTCAATGATGAGCTTCAGCAGGTAGTTTCTAACTATGAGAAGTTAGAAGCTGCTCAAATGTCTGGGACACAAGAGCCTCAAAATGCTGAACCCGCCAAGCATGATGCGGAAGCTGTTCAAAATCCCAATGAGGTACCTGTAAGGTTTGAAATTGATGATTCCGAAGAATCTGAAGCTGATCAGAATCTGGATCGAAAGGTGCCCCAAAAATCGAACACTCTTAAAGTCAATGCAACTGAGGTCGAGGGGAATGGTCTTGCTGAAACTGAAATAGTTAAGGACACAACGGAAAAGAATGGTGAATCTAGCTTCAAGCGAAATACCGAATGA 1209 0.4822 MERLKLAQLGERLKTGGAQMGRMVSGKVKEMLQAPTPESKMVDEATLETMEDPNWGINLRICAMINSDQFNGSEVVKAIKRKINHKNPLVQTLSLDLLEACAMNCDKVFSEIASEKLLDDLVRLIDNPQAHHSTRRRAFQLIRAWGDSEDLAYLPVFRQTYMRLKEGRDDPLDMAGGNSPSIPYASESYAHQYPVDPPERYPIPEAELAIDDPAAFSSNYQHISVEEKKEHLVVARNSLELLSSILNSEAEPKPLKEDLTVSLLGKCKQSLSIIKGIVESTTDDEATLFEALYLNDELQQVVSNYEKLEAAQMSGTQEPQNAEPAKHDAEAVQNPNEVPVRFEIDDSEESEADQNLDRKVPQKSNTLKVNATEVEGNGLAETEIVKDTTEKNGESSFKRNTE 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02116 402 SUPERFAMILY ENTH/VHS domain 34 166 IPR008942 -
Viun1g02116 402 Gene3D - 218 312 IPR038425 -
Viun1g02116 402 Pfam VHS domain 39 148 IPR002014 GO:0035091|GO:0043130
Viun1g02116 402 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
Viun1g02116 402 Pfam GAT domain 236 309 IPR004152 GO:0035091|GO:0043130
Viun1g02116 402 SUPERFAMILY GAT-like domain 188 309 - -
Viun1g02116 402 ProSiteProfiles GAT domain profile. 223 310 IPR004152 GO:0035091|GO:0043130
Viun1g02116 402 PANTHER TOM1-LIKE PROTEIN 1 5 367 IPR044836 GO:0035091|GO:0043130|GO:0043328
Viun1g02116 402 CDD VHS 39 165 - -
Viun1g02116 402 Gene3D - 28 174 IPR008942 -
Viun1g02116 402 MobiDBLite consensus disorder prediction 384 402 - -
Viun1g02116 402 MobiDBLite consensus disorder prediction 311 402 - -
Viun1g02116 402 ProSiteProfiles VHS domain profile. 45 166 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02116 Viun-Chr1 32429290 32431887 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02116 - - gmx:100803803 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02116 1 32429290 32431887 Viun1g02116 1 32429290 32431887 ECH