Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02085 ATGTCGAACCCTCAAAATCAGAAACCATGGAAGGCCGAATATGCGAAGTCGGGGCGATCGTCATGCAGGACGTGCAAGAGCCCCATTGCCAGTGAAACGCTGCGTCTCGGCAAGATGGTCCAATCCACCAAGTTCGATGGCCTCATGCCCATGTGGAATCATGCGGCTTGCATATTGAAGAAAGCTAATCAGATAAAACTAGTTGAGGACGTTGAAAACTTAGAGTCGCTTCGTTGGGAAGATCAGCAGAAGATCCGAAAATACATAGAGAGTGGCAGTGGTAGTGGCGACAACAGCAGCAGCGCTGCCACAAAGACAGGCTCAAAAGCTGTCAAAGATACTGAATGTGGTATTGAAGTTTCACAGACTTCTCGTGCTACTTGCAGGGATTGCAGTCAAAAGATTATCAAAGGAGAGGTTCGTATATCTACTAAGCCTGATGGTCCAGGTGCAAAAGGTTTGGCTTGGCACCATGCCAAATGTCTCGTGGAATTATCCCCATCAATCCAAGTAGATAAGTTATCTGGATGGAATAGTCTCTCATCTTCTGATCAATCAGCTGTCAGTGACTTCGCTAAGAAGTGTCATCCCATGAACAAGGGGGGTGTTAGTAGTACAAACATTGAGACTGAAAAGGGTAAAGAATCCACGCAACCACACACTTCCAAAGGTGGTATAAAACGAGGGAAAGATGCTGATAGTGAGCGAAAATCAAAAGTTGCTAAGGCCAAGGAAGATGTATCTGCGAGCAGTGAAGCATCAGTGAAGAATTATAATGAAACAGGGGAAGCATGTGATCTGGAGAAGAAAATGGAAATCCAGAGCAAAGAAATCTGGGCTCTGAAAGATGATCTCAAGAAGAAGGTGACAACAACAGAGTTACGTGAAATGCTGGAAGCCAACGGTCAAGACTCAACAGGATCAGAACTTGATTTACGTGACCGCTGTGCTGATGGAATGATGTTTGGAGCACTTGGTCTTTGCCCAATATGTTCTGGCTTTCTGCGTTACTCTGGAGGAATGTACCGTTGCACTGGATACATTTCCGAATGGAGTAAATGTTCTTACTCTACATGCGAACCAATACGTGTTGAAGGGAAGTGGAAAATCCCAGAAGAAACACATAATCAATACCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAGTTAGGATACTGCCTCTTCCATCACCAAGAAAATCTGCTGAAAGTCAAATTACTGCTAATCAGCATCAATCATCCGCTGGAAATTTCCAAGATATCAAAGTTGCTATCTGTGGATTAGCTAATGACACCATTGAGGAATGGAAACGCAAAATTAAGGCTATGGGTGGAATCTTTCATGCAAAAGTAAAGAAAGATACTAACTGCTTGGTGGTTGGTGGAGCGCTCAATGATGAAGCTGAGATGCGGAAGGCAAGGAGGATGAAAATACCAATAGTCAGAGAGGACTACTTAATTGACTGCATACAGAAAAAGAAGAGACTTCCATTTGATATGTACAAGGTTGAAATGATTGGTGAGGCTTCTAGCATGGTCACCATTAAAGTGAAGGGACAAAGTGCTGTTCATGAGGCTTCTGGCCTACAGGAGTCTGGTCACATACTTGTGGAAGGAAAAAGCATTTATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGTTACTACATTTGCCAGATAATCCAAGAAGATAAAGGGTCAGATTGCTATTTGTTTCGTAAATGGGGTCGAGTAGGAAGTGACAAGATTGGAGGAAATAAACTGGAGGAAATGTCAAAATCTGATGCAATCTGTGAATTCAAACGATTATTCCTTGATAAGACTGGAAACCCTTGGGAGGCATGGGAACAAAAGACCATTCAGAAGCAACCTGGAAGATTTTTCCCATTGGATATTGATTATGGTGTTAACAAACAGGTATCAAACAAGAAAAGAAATGATAATGACAGCAAATTACCCCCTCCGTTAATAGAATTGATTAAGATGCTCTTCAATGTGGAAACTTATAGATCTGCCATGATGGAGTTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTAAGCAAAAACAATATCCAAAAGGGGTTTGAAGCATTGACGGAGATACAAAATCTGTTTAAAATTACTGATCCTGATCCATCAGTCAAGGAAAGCTTACTTATTAATGCCAGCAACCGGTTCTTCACGATGATCCCTTCTATTCATCCACATATTATTAGGGATGAGGATGATTTTAAGTCCAAGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATAGCCTCTAGATTAGTTGGATTTGATGCCAACAATGAGGACTCAATTGATGATAGTTATAAGAAGCTCCACTGCGATATATCTCCACTTCCTCATGATAGTGAAGATTTTGGTTTAATTAAAAAGTTTCTCCTTAATACTCATGCCCCTACACATACGGACTGGAGTCTTGAGCTGGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAACTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGCATGGTTCTAGGCTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATAGCCCCTCCTGAAGCCCCCGCGACTGGCTATATGTTTGGGAAAGGAGTGTACTTTGCTGACCTGGTCAGCAAAAGTGCCCAGTATTGCTTCACTGATAAGAAAAACCCTGTTGGTCTAATGCTATTGAGTGAAGTTGCACTTGGAAACATCTATGAGCTCAAGAAAGCTAAGTATATGGATAAACCTCCCCAAGGAAAGCACTCTACTAAAGGACTGGGCAAGAAAATGCCTCAAGAATCGGAATATGCAAAGTGGAGAGGCGATGTGACTGTTCCTTGTGGCAAACCAGTGCCATCAAATGTCAAGGCTTCCGAGCTCATGTACAATGAGTATATTGTTTATGATACTGCCCAAGTTAAGATGCAATTCTTGTTGAAGGTGAGGTTTCATCACAAGAGATGA 3018 0.4165 MSNPQNQKPWKAEYAKSGRSSCRTCKSPIASETLRLGKMVQSTKFDGLMPMWNHAACILKKANQIKLVEDVENLESLRWEDQQKIRKYIESGSGSGDNSSSAATKTGSKAVKDTECGIEVSQTSRATCRDCSQKIIKGEVRISTKPDGPGAKGLAWHHAKCLVELSPSIQVDKLSGWNSLSSSDQSAVSDFAKKCHPMNKGGVSSTNIETEKGKESTQPHTSKGGIKRGKDADSERKSKVAKAKEDVSASSEASVKNYNETGEACDLEKKMEIQSKEIWALKDDLKKKVTTTELREMLEANGQDSTGSELDLRDRCADGMMFGALGLCPICSGFLRYSGGMYRCTGYISEWSKCSYSTCEPIRVEGKWKIPEETHNQYLKKWFKSQKGKKPVRILPLPSPRKSAESQITANQHQSSAGNFQDIKVAICGLANDTIEEWKRKIKAMGGIFHAKVKKDTNCLVVGGALNDEAEMRKARRMKIPIVREDYLIDCIQKKKRLPFDMYKVEMIGEASSMVTIKVKGQSAVHEASGLQESGHILVEGKSIYNTTLNMSDLSTGINSYYICQIIQEDKGSDCYLFRKWGRVGSDKIGGNKLEEMSKSDAICEFKRLFLDKTGNPWEAWEQKTIQKQPGRFFPLDIDYGVNKQVSNKKRNDNDSKLPPPLIELIKMLFNVETYRSAMMEFEINMSEMPLGKLSKNNIQKGFEALTEIQNLFKITDPDPSVKESLLINASNRFFTMIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANNEDSIDDSYKKLHCDISPLPHDSEDFGLIKKFLLNTHAPTHTDWSLELEEVFSLEREGEFDNFAPYRDKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGNIYELKKAKYMDKPPQGKHSTKGLGKKMPQESEYAKWRGDVTVPCGKPVPSNVKASELMYNEYIVYDTAQVKMQFLLKVRFHHKR 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02085 1005 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 119 190 IPR001510 GO:0003677|GO:0008270
Viun1g02085 1005 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 13 89 IPR001510 GO:0003677|GO:0008270
Viun1g02085 1005 CDD WGR_PARP1_like 535 640 - -
Viun1g02085 1005 FunFam Poly [ADP-ribose] polymerase 648 789 - -
Viun1g02085 1005 ProSiteProfiles PARP alpha-helical domain profile. 655 773 IPR004102 GO:0003950
Viun1g02085 1005 ProSiteProfiles SAP motif profile. 286 320 IPR003034 -
Viun1g02085 1005 ProSiteProfiles PARP catalytic domain profile. 780 1005 IPR012317 GO:0003950
Viun1g02085 1005 SUPERFAMILY BRCT domain 416 505 IPR036420 -
Viun1g02085 1005 ProSiteProfiles WGR domain profile. 534 633 IPR008893 -
Viun1g02085 1005 Gene3D - 645 789 IPR036616 GO:0003950
Viun1g02085 1005 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 10 93 IPR001510 GO:0003677|GO:0008270
Viun1g02085 1005 Gene3D - 2 109 IPR036957 GO:0003677|GO:0008270
Viun1g02085 1005 Gene3D - 110 214 IPR036957 GO:0003677|GO:0008270
Viun1g02085 1005 SMART WGR_cls 545 628 IPR008893 -
Viun1g02085 1005 FunFam Poly [ADP-ribose] polymerase 324 385 - -
Viun1g02085 1005 Gene3D BRCT domain 399 507 IPR036420 -
Viun1g02085 1005 Pfam Poly(ADP-ribose) polymerase catalytic domain 800 1001 IPR012317 GO:0003950
Viun1g02085 1005 Gene3D - 790 1005 - -
Viun1g02085 1005 Gene3D - 324 384 IPR038650 -
Viun1g02085 1005 FunFam Poly [ADP-ribose] polymerase 790 1005 - -
Viun1g02085 1005 SUPERFAMILY ADP-ribosylation 789 1004 - -
Viun1g02085 1005 FunFam Poly [ADP-ribose] polymerase 4 106 - -
Viun1g02085 1005 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 95 - -
Viun1g02085 1005 MobiDBLite consensus disorder prediction 193 253 - -
Viun1g02085 1005 CDD parp_like 656 1000 - -
Viun1g02085 1005 Pfam WGR domain 545 623 IPR008893 -
Viun1g02085 1005 Gene3D - 250 323 - -
Viun1g02085 1005 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 117 204 - -
Viun1g02085 1005 ProSiteProfiles BRCT domain profile. 415 505 IPR001357 -
Viun1g02085 1005 SMART BRCT_7 417 495 IPR001357 -
Viun1g02085 1005 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 258 397 IPR047572 GO:0008270
Viun1g02085 1005 Pfam BRCA1 C Terminus (BRCT) domain 420 492 IPR001357 -
Viun1g02085 1005 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 656 790 IPR036616 GO:0003950
Viun1g02085 1005 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 116 190 IPR001510 GO:0003677|GO:0008270
Viun1g02085 1005 FunFam Poly [ADP-ribose] polymerase 109 223 - -
Viun1g02085 1005 Pfam Poly(ADP-ribose) polymerase, regulatory domain 656 786 IPR004102 GO:0003950
Viun1g02085 1005 FunFam Poly [ADP-ribose] polymerase 413 514 - -
Viun1g02085 1005 PANTHER DNA LIGASE 115 1003 - -
Viun1g02085 1005 SUPERFAMILY WGR domain-like 513 638 IPR036930 -
Viun1g02085 1005 SMART zf_PARP_3 13 90 IPR001510 GO:0003677|GO:0008270
Viun1g02085 1005 SMART zf_PARP_3 119 193 IPR001510 GO:0003677|GO:0008270
Viun1g02085 1005 PIRSF NAD_ADPRT 3 1005 IPR008288 GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287
Viun1g02085 1005 SMART PADR1_2 312 365 IPR012982 GO:0008270
Viun1g02085 1005 MobiDBLite consensus disorder prediction 224 246 - -
Viun1g02085 1005 FunFam Poly [ADP-ribose] polymerase 250 323 - -
Viun1g02085 1005 Pfam PADR1 (NUC008) domain 314 363 IPR012982 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02085 Viun-Chr1 32202220 32211637 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02085 K24070 - gmx:100800968 1778.45