Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02055 ATGAGGACCATGGAAGTTCCGGGACTCTCTGAAACATTCACCAGACTGAGAAAAGAAGGAAAAGTGGCTTTCATACCATATATTACAGCCGGTGATCCTGACCTTTCAACCACAGCAGAAGCACTGAAAGTGCTTGATTCATGCGGGTCTGACATAATTGAGCTAGGTGTTCCATATTCTGATCCCTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTCTTGCAAAGGGGACCAATTTCAATGCAATCATTTCTATGTTGAAGGAGGTTGTTCCGGAATTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGAGAAATTTATGTCTATTGTAAGAGAAACTGGCGTACATGGGCTCGTGGTCCCGGATGTCCCTCTGGAGGAGACGGAGACTTTAAGGGTGGAGGCTAAGAAAAATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCAAAAGACCGAATGAAGGCCATTGTTGATGCAGCAGAAGGATTTGTGTACCTTGTGAGCTCGGTGGGGGTCACAGGAGCCCGATCATCAGTTAGTGGTAATGTTCAGTCTCTTCTGCAGGAAATTAAAGAGGCAACAACTAAACCCGTTGCTGTTGGTTTTGGAATATCAAAGCCCGAGCATGTTAAACAGGTAGCAGGATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATGGTGAAGGTGCTTGGAGAAGCCAAATCTCCTCAAGAGGGATTGAAAGAGCTGGAAGCTTTTGCCCGCACCTTAAAGGAGGCACTTCCTTAA 813 0.4625 MRTMEVPGLSETFTRLRKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFNAIISMLKEVVPELSCPIALFTYYNPILKRGTEKFMSIVRETGVHGLVVPDVPLEETETLRVEAKKNGIELVLLTTPTTPKDRMKAIVDAAEGFVYLVSSVGVTGARSSVSGNVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPQEGLKELEAFARTLKEALP 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02055 270 Pfam Tryptophan synthase alpha chain 13 268 IPR002028 GO:0004834|GO:0006568
Viun1g02055 270 FunFam Tryptophan synthase alpha chain, chloroplastic 7 270 - -
Viun1g02055 270 PANTHER TRYPTOPHAN SYNTHASE, ALPHA CHAIN 7 269 IPR002028 GO:0004834|GO:0006568
Viun1g02055 270 SUPERFAMILY Ribulose-phoshate binding barrel 9 249 IPR011060 -
Viun1g02055 270 Gene3D Aldolase class I 8 270 IPR013785 -
Viun1g02055 270 ProSitePatterns Tryptophan synthase alpha chain signature. 53 66 IPR018204 GO:0004834
Viun1g02055 270 NCBIfam tryptophan synthase subunit alpha 13 266 IPR002028 GO:0004834|GO:0006568
Viun1g02055 270 CDD Tryptophan_synthase_alpha 23 266 IPR002028 GO:0004834|GO:0006568
Viun1g02055 270 Hamap Tryptophan synthase alpha chain [trpA]. 19 268 IPR002028 GO:0004834|GO:0006568
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02055 Viun-Chr1 31876162 31880574 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02055 K01695 - gmx:732610 479.559