Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02014 ATGCTTGGAGTGAGAAAGCTCAAAACGGGGCCTGATATCCCTTTGGTTTTAAGTGTCATGGTTGCTAAATGCAATTATAGAACAGCCCAAGTTTCCAGTGACAAAAGTGTCAGGTATATTGTTAAGTCGGCTGTCTCTTGTTTAGCTAAATCAAGTTCACCAGCATTTCTACTGGGATCAGAGAATAATTTTGCTCTTCAGGGACTATATTTCTCTAGTGTGGCTGAAAGAATCCTGATCCATGCTCAAGACCCTGCCAAAGTTAGTTTGGAGATACAAAATGCTATCGATTTGAATCAATTAGATTATTCGTGGAAATTATTGGAGCAGCATATGCACATGGAGGGGTTTCCCAGAAAATCAGTCATCAGTAAGCTTGTAACAAGCTATGTGGACAGCCTTGATACGAAATTGCTAGGTAAGGCTTATGAGTTGGTAGAACGTGCTATTGAGAAAGGTAAACAAGATTTGTTGGAAAAGGATGTGCTTATCTACCTCAGCTTTGGCCTTGCAAAAGCCAGACTACCAGTTCCAGCATCAACCATTTTAAGAAAGATGATAGATATGGAGCATTTTCCCCCAGCCACTGCTTGGTCTGCAGTTTTAGCGCACATGTCACAAACAGCAGAAGGAAGTTATCTTGCTGCTGAGTTGATTCTTGAAATAGGTTATTTGTTCCAGAACAATAGAGTAGAGCCGCGTAAAAAGAGCAATGCACCTTTGATAGCCATGAAGCCAGACAGTGCTGCTTTTAGCATTGCTTTGGCAGGGTGCCTCCTATTTGAGTCATCTAGGAAGGCAGAACAGCTTCTTGATATGATGCCTCGAATTGGTGTCAAAGCAGATGCACACTTACTGATAATAATGGCACGTGTATACGAGAGAAATGGGAGAAGGGAAGAGCTCAAAAAGCTGCAAAGGCACGTAGAGGAAGCTCCAAATCTAACTGATTTACAGTTTCGACATTTCTATAATTGTTTATTGACATGCCATTTGAAATTTGGGGATCTAGATTCTGCATCAAACATGGTTTTGGAAATGCTTAGGAAAGCAAAGGAAGCAAGAAATTCTCTTGCAGCTGCCAAATTTATGATGAATGCACATGGAATTGATCATAACCGTTCTCCTGGACTGGCTTCTGTGCATAGTTTGAACAACAGTAAAGATTTAGATAGTTTACAAAATAACAGGTCAAATTCAAGTGCTGTATTATCTTATGAGGAGTTCTCTAAAGATAGGAACTTCTCAAAGCTTGAGGCAGAGTCCAAAGCTATACTTGGTTCTTTATTATCAAAGTTGCAGATGCGGGTGGACTTGATCACAACCAAGCATGGTATATTGCAACCAACTGAAACAATTTATGTAAAATTAGTTAAAGCTATGCTAGAAGCTGGCAAGACCAAAGATTTAGCTGTGTTTCTTCTCAAGGCAGAAAGAGAAGATTCTCCATTTTCCAATGACAATTCAGCTTTGGTTCATGTTATTAACGCCTGCATCTCACTTGGATGGCTGGACCAAGCACATGATCTCCTGGATGAAATGCGTCTAGCCGGAGTTAGAACTGGTTCATCTGTATACTCCTCTCTTTTGAAAGCATATTGCAGAGCGAATAGGGTGGCAGATGTCACATCGCTTCTGAGAGATGCTAGGATAGCTGGTATCCAGTTTGACTCAAGCTCTTATGAGGCGATGATCCAATCCAGAGTGCTTCAGCAAGACACCCAGGGAGCACTTCAACTATTTAAAGAGAGGAAAGAGGCTAGAATTCCAAGAGTTACTGAACAAAATTCTGGCATGATGGCTAAAGATGGAACGGGGACTGAAGAAGCTGGGCTAATGACCAAGCTGTTACAGGAAATCAAGGAAGGGCAGAGAGTGGACTGTGGAGTGCATGACTGGAATAATGTAATCCACTTCTTTTGCAAGAAGAAACTGATGCAAGATGCAGAAAAGGCTCTAAAGAAGATGAGAAGCTTAGGCCACTTGCCAAATGCTCAAACTTTTCATTCTATGGTCACAGGGTATGCTGCCACTGGAGGAAAATATCAAGAGGTGACAGAGCTGTGGGGTGAGATGAAAGGTCTTGCTTCTTCCGTCTCCATGACGTTTGATCAGGAACTTCTTGATTCTGTGTTGTATACATTTGTAAGGGGTGGATTTTTCGTTCGAGCCAATGAAGTTGTGATCATGATGGAAAAAGGAAACATGTTTATTGACAAATACAAGTACCGAATGCTATTCTTGAAATACCATAAATCACTTTACAAAGGGAAGGCTCCGAAATTTCAGACAGAATCCCAACTAAGCAAAAGGGAAGCAGCCCTGTCTTTTAAAAGGTGGATAGGCTTGACTTGA 2355 0.4127 MLGVRKLKTGPDIPLVLSVMVAKCNYRTAQVSSDKSVRYIVKSAVSCLAKSSSPAFLLGSENNFALQGLYFSSVAERILIHAQDPAKVSLEIQNAIDLNQLDYSWKLLEQHMHMEGFPRKSVISKLVTSYVDSLDTKLLGKAYELVERAIEKGKQDLLEKDVLIYLSFGLAKARLPVPASTILRKMIDMEHFPPATAWSAVLAHMSQTAEGSYLAAELILEIGYLFQNNRVEPRKKSNAPLIAMKPDSAAFSIALAGCLLFESSRKAEQLLDMMPRIGVKADAHLLIIMARVYERNGRREELKKLQRHVEEAPNLTDLQFRHFYNCLLTCHLKFGDLDSASNMVLEMLRKAKEARNSLAAAKFMMNAHGIDHNRSPGLASVHSLNNSKDLDSLQNNRSNSSAVLSYEEFSKDRNFSKLEAESKAILGSLLSKLQMRVDLITTKHGILQPTETIYVKLVKAMLEAGKTKDLAVFLLKAEREDSPFSNDNSALVHVINACISLGWLDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCRANRVADVTSLLRDARIAGIQFDSSSYEAMIQSRVLQQDTQGALQLFKERKEARIPRVTEQNSGMMAKDGTGTEEAGLMTKLLQEIKEGQRVDCGVHDWNNVIHFFCKKKLMQDAEKALKKMRSLGHLPNAQTFHSMVTGYAATGGKYQEVTELWGEMKGLASSVSMTFDQELLDSVLYTFVRGGFFVRANEVVIMMEKGNMFIDKYKYRMLFLKYHKSLYKGKAPKFQTESQLSKREAALSFKRWIGLT 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02014 784 Gene3D Tetratricopeptide repeat domain 431 587 IPR011990 GO:0005515
Viun1g02014 784 Pfam Pentatricopeptide repeat domain 544 589 IPR002885 -
Viun1g02014 784 Pfam PPR repeat 494 519 IPR002885 -
Viun1g02014 784 Pfam PPR repeat 324 350 IPR002885 -
Viun1g02014 784 NCBIfam pentatricopeptide repeat 633 665 IPR002885 -
Viun1g02014 784 Gene3D Tetratricopeptide repeat domain 86 384 IPR011990 GO:0005515
Viun1g02014 784 Gene3D Tetratricopeptide repeat domain 597 781 IPR011990 GO:0005515
Viun1g02014 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Viun1g02014 784 PANTHER BNAC05G43320D PROTEIN 22 783 - -
Viun1g02014 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Viun1g02014 784 Pfam PPR repeat family 631 676 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02014 Viun-Chr1 31599938 31603963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02014 447 760 Glycosyltransferase AT1G05670 23.492 1.04e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02014 - - gmx:102661989 1355.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02014 1 31599938 31603963 Viun1g02014 1 31599938 31603963 ECH