LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g01995	ATGGCTTCTCCCTTCTCCACCCACTGTCACCTTCCTTCTTTCTCTTCTTCTAACCATTTCCCTCTTCCATCACCATCATCACCATCTTCTTCTTCTGCTTCTTTTATTTTTCTTCACCACTTCTCCAAATCCTCTCTTGGTTCTGTGTTGTCCGATACTAGCGACAAACAAGAGATAAGATGCAGAGCTATATCGAAGCCACGAACGCAAGAATATTCAGAGATACTCCAGGGTAGTCTAGCAATGTTAAAGTTGCGTGAGATTAATGTGGAGGATGACATAGAAGAGGAGCAAGACAATGGGGTTTTGGTGGCAAAAGAGATCAAGAAGAGAGTGGACACTATCAAATCGATATTGAGTTCATTGGAAGATGGAGAGATAACTGTGTCTGCTTATGACACTGCTTGGGTTGCTCTGGTAAAAGATGTTAATGGAAGTGGTGCCCCTCAATTTCCAGCGAGTTTAGAATGGATAGCAAAAAACCAACTTCAGGATGGATCATGGGGTGATAATGAATTGTTTTCGGCCCATGATCGGATCATAAACACGTTGGCTTGTGTTATTGCATTAAAGTCATGGAATATGCACCCTGAAAAGTGTGAGAAAGGAATGACATTTTTTAGGGAGAATCTTAACAAGCTTGAGAACGAGAATGTGGAGCATATGCCAATTGGGTTTGAAGTAGCTTTCCCATCACTTCTTGACCTGGCTCGTGGGTTGGAAATCGAAGTGCCTGAAAATTCCCCAATCCTGAACAAAATCTTTGCAATGAGAAACGTAAAACTTACAAGAATACCAAGAAAGATGATGCATAAAGTGGCCACAAGTCTGCTTCATAGCTTGGAGGGGATGTCAGACCTGGATTGGAATTCACTTCTGAAACTGCAGTCTCAAGACGGGTCTTTCTTGTTTTCTCCGTCCTCCACCGCTTTTGCTCTCATGCAAACCAAAGATCAAAATTGTCATGCTTACTTGAATCAAATCGTGCAGAGGTTCAATGGTGGAGTTCCAAATGTGTATCCAGTGGATTTGTTCGAACATATTTGGGTGGTTGATAGGCTGGAACGCCTAGGAATATCTCGGTATTTTCAGCAAGAGATCAAAGACTGCATGAGCTATGTTAATAGATATTGGACCGAAAAGGGTATTTGTTGGGCAAGAAACTCAGAAGTTCAAGACATTGATGACACAGCAATGGGTTTCAGATTACTGAGATTACATGGCCATGAAGTTTCAGCTGATGTGTTCAAGCACTTTGAGAGAAATGGTGAATTTTTCTGTTTTAAGGGACAAAGTACACAAGCTGTGACAGGGATGTTCAATCTGTTAAGGGCGAGTCAAGTAATGTTTCCCGGAGAGAAGATTCTAGAAGATGGGAAGAAGTTCTCCTCAAAATTTTTGGGGGAGAAGAGAGGCGCAAATGAGCTGGTAGATAAATGGATCATAATGAAAAACTTAGCTGAAGAGGTGGCATATGCATTGGACCTGCCATGGTATGCAAGTTTGCCTCGAGTGGAGACAAGATTCTACATTGATCAATACGGCGGTGAGAGTGACGTATGGATAGGCAAGACCCTTTATAGGATGCCCTATGTGAACAACAACAACTATCTGGATCTTGCTAAAGTAGATTACAACAATTGTCAAGCAATGCATCTAATGGAGTGGGGAAGGATTCAGAAGTGGTACTCAGAATCTAGATTGGCAGAGTTTGGAATGAACAGAAGAACTCTTCTGTTGGCTTATTTTCTGGCAGCAGCGAGCATATTTGAACCAGAAAAATCTCATGTCAGGCTTGCTTGGGCCAAAACCACAATCTTACTTGAGACCATAACATCCTATGTTAGTGATGCAGAAATGAGGAAAACTTTCATGAAAAATTTCAGTGACTGCATTAGCAGGCGTGACTACTCCATTGGCTGGAGGTTGAACAGGAACAGAACAGGACATGGACTTGTGGAAACTTTGGTCACTACCATAGATCAAATATCTTGGGATATACTTGTTTCTCAAGGTCATGAAATTGGATATGATATGCATCGCTCTTGGGAAAAGTGGCTTTCAAGTTGGCACAAAGAAGGAGACAAATGTGAAGGACAAGGAGAGCTTTTGGCGCAGATAATAAACCTATGTGGCGGGCATTGGATTTCAGAGGATCAAATGTTCGATCCTCAATATGAGACTCTCCTTCAACTCACTAACTCACTCTGCCATACTCTCTATTCTCATCAAAAGGACAAGGAATCGGAGAGCAAGAACTTCCCAGAAGTTGAGTCGAAAATGCAAGAACTGGTGCAATTGGTGTTCCAAAAATCTCCATCTGGCATTGATTTCAATATCAAGAAGACTTTTCTCGGTGTGGTGAAGAGTTATTACTATGCAGCTTTCTGTGATTCAAGGACCATCAACTTCCACATTGCCAAAGTTCTGTTTGATAAAGTTATTTAA	2448	0.4163	MASPFSTHCHLPSFSSSNHFPLPSPSSPSSSSASFIFLHHFSKSSLGSVLSDTSDKQEIRCRAISKPRTQEYSEILQGSLAMLKLREINVEDDIEEEQDNGVLVAKEIKKRVDTIKSILSSLEDGEITVSAYDTAWVALVKDVNGSGAPQFPASLEWIAKNQLQDGSWGDNELFSAHDRIINTLACVIALKSWNMHPEKCEKGMTFFRENLNKLENENVEHMPIGFEVAFPSLLDLARGLEIEVPENSPILNKIFAMRNVKLTRIPRKMMHKVATSLLHSLEGMSDLDWNSLLKLQSQDGSFLFSPSSTAFALMQTKDQNCHAYLNQIVQRFNGGVPNVYPVDLFEHIWVVDRLERLGISRYFQQEIKDCMSYVNRYWTEKGICWARNSEVQDIDDTAMGFRLLRLHGHEVSADVFKHFERNGEFFCFKGQSTQAVTGMFNLLRASQVMFPGEKILEDGKKFSSKFLGEKRGANELVDKWIIMKNLAEEVAYALDLPWYASLPRVETRFYIDQYGGESDVWIGKTLYRMPYVNNNNYLDLAKVDYNNCQAMHLMEWGRIQKWYSESRLAEFGMNRRTLLLAYFLAAASIFEPEKSHVRLAWAKTTILLETITSYVSDAEMRKTFMKNFSDCISRRDYSIGWRLNRNRTGHGLVETLVTTIDQISWDILVSQGHEIGYDMHRSWEKWLSSWHKEGDKCEGQGELLAQIINLCGGHWISEDQMFDPQYETLLQLTNSLCHTLYSHQKDKESESKNFPEVESKMQELVQLVFQKSPSGIDFNIKKTFLGVVKSYYYAAFCDSRTINFHIAKVLFDKVI	815

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun1g01995	815	FunFam	Ent-copalyl diphosphate synthase, chloroplastic	548	815	-	-
	Viun1g01995	815	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	131	314	IPR008930	-
	Viun1g01995	815	SUPERFAMILY	Terpenoid synthases	533	797	IPR008949	-
	Viun1g01995	815	Coils	Coil	80	100	-	-
	Viun1g01995	815	Gene3D	-	131	343	-	-
	Viun1g01995	815	Pfam	Terpene synthase, N-terminal domain	288	494	IPR001906	GO:0010333\|GO:0016829
	Viun1g01995	815	FunFam	Ent-copalyl diphosphate synthase, chloroplastic	322	545	-	-
	Viun1g01995	815	Gene3D	-	114	546	IPR036965	GO:0010333\|GO:0016829
	Viun1g01995	815	PANTHER	ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC	106	812	-	-
	Viun1g01995	815	SFLD	Terpene Cyclase Like 1 N-term	104	528	-	-
	Viun1g01995	815	Gene3D	Farnesyl Diphosphate Synthase	548	815	IPR008949	-
	Viun1g01995	815	SFLD	Terpene Cyclase Like 1 N-term - Enzymatic	104	528	-	-
	Viun1g01995	815	FunFam	Ent-copalyl diphosphate synthase	131	343	-	-
	Viun1g01995	815	Pfam	Terpene synthase family, metal binding domain	538	697	IPR005630	GO:0000287\|GO:0010333\|GO:0016829
	Viun1g01995	815	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	299	519	IPR008930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g01995	Viun-Chr1	31294655	31302598	Dispersed/Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g01995	K04120		-	gmx:100784193	1395.56

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun1g01995	1	31294655	31302598	Viun1g01995	1	31294655	31302598	ECH