Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01962 ATGTTGCATGAGCTGAGGGTGGGTATGAGGGAGTTCCGACCAGGGAATTTCGTGTACGATGCTGAGGATATTCCATTTGGGACTCTGTGGTGGTTCCTTTATGCTGGAATTTCTTGCTTGCTTGTTCTCTTCGCTGGGATTATGTCTGGTCTCACTCTTGGATTAATGTCTCTGGGTCTCGTTGACCTTGAGATTCTCCAGCAGAGTGGTTCCTCCACCGAGAAGAAACAAGCTGCTGCTATTTTGCCGGTTGTTCAGAAGCAGCATCAGTTGCTTGTCACCTTGCTTCTTTGTAACGCCTGTGCCATGGAGGCACTTCCAATTTACCTTGACAAAATTTTTCATCCGTTTGTGGCAGTACTGTTATCTGTGACTTTTGTTCTCGCTTTTGGAGAGGTTATCCCACAAGCTATATGCACGAGATATGGGCTCTATGTTGGTGCTAATTTTGTGGGGCTTGTACGTGTTCTCATGATCATCTGTTATCCAATTGCTTTTCCTATTGGAAAGGTTCTGGATGTTTTACTTGGACATAGTCATGCATTATTTAGGCGAGCACAGTTGAAAGCCCTTGTTTCAATCCACAGCCAAGAGGCTGGTAAAGGAGGTGAACTCACTCATGACGAGGCAACGATTATCAGCGGAGCACTAGATCTCACGGAGAAGACTGCTGAGGAGGCCATGACACCAATTGAATCTACATTTTCCTTGGATGTGGCTTCCAAATTGGACTGGGAAGCAATTGGGAAAATTCTTTCACGAGGCCATAGTCGTGTTCCTGTATACAGCGGAAACCCCAAAAATATAATTGGCCTCTTACTAGTAAAGAACCTTCTTACTGTAAGAGCTGAAACAGAGACCCCAGTCAGTGCTGTTTCCATCCGGAGAATTCCTAGAGTTCCAGCAGATATGCCTCTATATGATATCCTCAATGAGTTTCAAAAAGGAAGCAGTCATATGGCAGCTGTAGTCAAGGTTACACGAGAGACAAAGTACCCTCTGGCAACTGCTAACATTGAGAAATCCAAGGATAAAGAAGTCATAAAGCAGAGTTCTCAACTAACTATGCCATTACTAGCCAGGTTTTACGAGAAATCAGAAAAGGTTGTCAATATTGACAAACTCTCTAAGCATGCTGCAGAACAACAATTTCAAAAGGATGTCACTGCAACAAATGGTTCCCACCACTCTCTTGACAATTTTGACGATGGGGATGAAGTTATTGGCATCATTACCTTGGAGGACGTGTTTGAAGAACTCCTTCAGGAAGAAATTGTGGACGAGACTGATGTGTATATAGATGTACATAGAAGAATACGTGTGGCTGCTGTAGCAGCTGCTACATCTGTGGCGCGGGTTCCTTCTGGCCGAAAGTTGGCAGGTCAAAAGCCTGTAGTGACTCAGAATCAGGGAAATTAA 1419 0.4426 MLHELRVGMREFRPGNFVYDAEDIPFGTLWWFLYAGISCLLVLFAGIMSGLTLGLMSLGLVDLEILQQSGSSTEKKQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEVIPQAICTRYGLYVGANFVGLVRVLMIICYPIAFPIGKVLDVLLGHSHALFRRAQLKALVSIHSQEAGKGGELTHDEATIISGALDLTEKTAEEAMTPIESTFSLDVASKLDWEAIGKILSRGHSRVPVYSGNPKNIIGLLLVKNLLTVRAETETPVSAVSIRRIPRVPADMPLYDILNEFQKGSSHMAAVVKVTRETKYPLATANIEKSKDKEVIKQSSQLTMPLLARFYEKSEKVVNIDKLSKHAAEQQFQKDVTATNGSHHSLDNFDDGDEVIGIITLEDVFEELLQEEIVDETDVYIDVHRRIRVAAVAAATSVARVPSGRKLAGQKPVVTQNQGN 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01962 472 Gene3D - 209 337 IPR046342 -
Viun1g01962 472 PANTHER METAL TRANSPORTER CNNM 17 445 IPR045095 GO:0010960
Viun1g01962 472 Gene3D - 338 428 IPR046342 -
Viun1g01962 472 FunFam DUF21 domain-containing protein At4g14240-like 209 346 - -
Viun1g01962 472 CDD CBS_pair_CorC_HlyC_assoc 223 324 IPR044751 -
Viun1g01962 472 ProSiteProfiles CNNM transmembrane domain profile. 27 209 IPR002550 -
Viun1g01962 472 Pfam Cyclin M transmembrane N-terminal domain 37 208 IPR002550 -
Viun1g01962 472 SUPERFAMILY CBS-domain pair 213 422 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01962 Viun-Chr1 30971788 30977673 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01962 K16302 - gmx:100777230 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01962 1 30971788 30977673 Viun1g01962 1 30971788 30977673 ECH