Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01957 ATGGCAAGTGTTGTATCACTCTTCTCATTCTCACTGATTCCTTTCAATCAACACAAATTCCAAGCCAAAAGTTTTTGTTTTTACAAACCCTTGATCCAAAGGAAGCACCACCAACTTGGATCGGAAAACCTCTTTCCCCCCTTTTTCCGAAACCCATCTTCGAAATTATGTGCCACTTCACGATTGTCCATTGATGAGACGGAGCAGCAAGTCGGAACCTTGACCCGGCCCGAAGACCTGAAAGGGGCGTTGGCTTATTTGTTTAGGACGGAAACTGGTGGAGGTTTGGTGAAAGTTTATGTCACAAAGAAAAAAGATAGGTATTTTGTTTACATTGAGATTTCTTCGTTGGATGCGAATCATTATGGTGAAAGTGAAACATTGGTGTTGTGTTGGGGTGTGTATCGAGGTGATTCATCTTGTTTTGTGGATATGGATTCGACTGGTTTGAGTGAGATTGCGGCAAAGCGGATGAATGTTAGTCCTTTGGTGCAAACATCTGTTGGCAAGTTTGGAGTTGAGTTGGAATTCGATGCCAAATACGTTCCTTTGTACTTGTCATTTTTCTTGATGTCGTCTTTGGATGCAGGGTTGGAGATTAGAAGCCACAGGAGAACGAATTTTTGCGTGCCGATTGGGTTGCTTCCGGGTTACCCGGGTCCTTTGGGCCTCTCTTATTCTCCTGATGGCTCTGTGAATTTTGCTATTTTCTCGAGACATGCTGAGAGTGTGGTTTTGTGCTTGTATGATGAGAAGGGTGTGGAGAAGCCTGCTTTGGAGGTTGATTTGGATCCCTATGTGAATAGGTCAGGTGTCATGTGGCATGTCTCGTTTGAGAGTGTCAAGAGTTTTGTGAGCTATGGTTTTCGCTTCAGAGGGGGTGTTCATAAGCAGAACAGAGGTGATAGTTCTGTCGAGCATGTTGTTTTGGACCCGTATGCTAAGATTGTCGCTAATTCTTGTCCTGGTGGTCTTGGACTAGTGCAGAATCTGGGATGGTTGAGAAAGGAACCTGGTTTTGACTGGGGTGGTGACTTTCACCCAGATTTGGCCATGGAGGAACTAGTGGTTTACAGGTTGAATGTCAAACGCTTTACACAGCATGAGTCAAGCCAACTTCCAAGTGGTTCAGCTGGAACCTTTACTGGTTTGGCTGAGAAGGTTCAGCATTTTAAAGATCTAGGTGTGAATGCTGTTCTGCTGGAGCCGGTTTTCACATTTGATGGAAAAAAAGGACCATATTTTCCCTGCCATTTTTTCTCCCTTATGCACATTTATGGACCATCTGGTGATCCTGAATCTACTATGGCCTCTATGAAAGAGATGGTTAAAATTATGCATGCCAATGGGATAGAAGTTCTTATGGAAGTAGTTTTCTCCAACACTGCTGAGGTTGGTGCTCTACAGGGAATCGATGACTCATCCTACTATTTACCAAATGGAGTTGGTGATTTGAAGATACATAGTGCTTTGAACTGTAACTATCCTATAGTGCACAATTTGATTCTGGATAGTCTGCGGCATTGGGTGACTGAGTTTCACATTGATGGCTTCTCTTTCATAAATGCTTCACACCTGCTGAGGGGATTTCATGGGGAGTGCTTGTCCAGACCACCATTAGTTGAAGCAATTGCTTTTGATCCGGTACTCTCCAAGACCAAAATCATTGCAGATTGTTGGGATCCTCATGCCATGGTAGCCAAGGAGATTCACTTTCCTCATTGGATGAGATGGGCCGAAATGAATGCAAGATTTTGTAATGATGTGAGGAACTTTTTAAGGGGTGAAAGTCTTCTTAGCGACCTTGCAACAAGACTTTGTGGGAGTGGAGACATGTTTTCTGGCGGACGAGGCCCAGCATTCTCTTTTAACTACATTGCCAAGAATTTGGGATTTTCTCTTGTAGACTTGGTTAGCTTCAACAGTGATGATGAATTAAGTTGGAATTGTGGGGAAGAAGGAGCCACTAACAACACCAGTGTCCTTGAAACACGGCTCAAACAAATCCGTAATTTCCTCTTTGTCTTGTTTGTGTCATTAGGAGTACCTGTTCTGAACATGGGAGATGAATGTGCTCACTCCTCTGCTGCTTCTCTTGCACATGATGATATAAAGCCCATCACTTGGAGTGCTGTGACAACAGGGTTTGGTAAACAAATCTCACAATTCATTTTCTTTATGAGTTCACTGAGAAAGAGGAGGAGTGATGTTCTTCAGAGAAGGAGCTTCTTAAAAGAAGAAAACATAGAATGGTATGGAAGTGATGGGGCTCCACCAAGATGGGAAGATCCATCATGCAAGTTCCTGGCCATGAATTTGAAGACTGAAGCAGCAAAGTTCCCAGATAGCTCTGTATCTTCTGATATATCTGGGGATCTATTTATTGCTTTCAATGCAGCTGATCAACCAGAAACTACAGTTTTACCTCTGCCTCCACAAGGGATGTCATGGTTCCGCTTAGTTGACACAACACTTCCATTTCCAGGTTTTTTCTCAAGCAGTGGTGAAATTGTCCCTGAGATGAAATATAAAATGAAGTCTCATAGCTGTGTTTTGTTTGAGGCGAGTAATTATACCATTTAA 2583 0.4305 MASVVSLFSFSLIPFNQHKFQAKSFCFYKPLIQRKHHQLGSENLFPPFFRNPSSKLCATSRLSIDETEQQVGTLTRPEDLKGALAYLFRTETGGGLVKVYVTKKKDRYFVYIEISSLDANHYGESETLVLCWGVYRGDSSCFVDMDSTGLSEIAAKRMNVSPLVQTSVGKFGVELEFDAKYVPLYLSFFLMSSLDAGLEIRSHRRTNFCVPIGLLPGYPGPLGLSYSPDGSVNFAIFSRHAESVVLCLYDEKGVEKPALEVDLDPYVNRSGVMWHVSFESVKSFVSYGFRFRGGVHKQNRGDSSVEHVVLDPYAKIVANSCPGGLGLVQNLGWLRKEPGFDWGGDFHPDLAMEELVVYRLNVKRFTQHESSQLPSGSAGTFTGLAEKVQHFKDLGVNAVLLEPVFTFDGKKGPYFPCHFFSLMHIYGPSGDPESTMASMKEMVKIMHANGIEVLMEVVFSNTAEVGALQGIDDSSYYLPNGVGDLKIHSALNCNYPIVHNLILDSLRHWVTEFHIDGFSFINASHLLRGFHGECLSRPPLVEAIAFDPVLSKTKIIADCWDPHAMVAKEIHFPHWMRWAEMNARFCNDVRNFLRGESLLSDLATRLCGSGDMFSGGRGPAFSFNYIAKNLGFSLVDLVSFNSDDELSWNCGEEGATNNTSVLETRLKQIRNFLFVLFVSLGVPVLNMGDECAHSSAASLAHDDIKPITWSAVTTGFGKQISQFIFFMSSLRKRRSDVLQRRSFLKEENIEWYGSDGAPPRWEDPSCKFLAMNLKTEAAKFPDSSVSSDISGDLFIAFNAADQPETTVLPLPPQGMSWFRLVDTTLPFPGFFSSSGEIVPEMKYKMKSHSCVLFEASNYTI 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01957 860 Pfam Alpha amylase, catalytic domain 379 465 IPR006047 GO:0005975
Viun1g01957 860 CDD AmyAc_plant_IsoA 353 739 IPR044096 GO:0019156|GO:0019252
Viun1g01957 860 Gene3D Immunoglobulins 207 323 IPR013783 -
Viun1g01957 860 SUPERFAMILY (Trans)glycosidases 338 733 IPR017853 -
Viun1g01957 860 SMART aamy 359 733 IPR006047 GO:0005975
Viun1g01957 860 Gene3D - 747 859 IPR013780 -
Viun1g01957 860 PANTHER GLYCOGEN DEBRANCHING ENZYME 179 855 - -
Viun1g01957 860 Gene3D Glycosidases 336 746 - -
Viun1g01957 860 SUPERFAMILY E set domains 216 348 IPR014756 -
Viun1g01957 860 SUPERFAMILY Glycosyl hydrolase domain 746 855 - -
Viun1g01957 860 CDD E_set_GDE_Isoamylase_N 221 359 IPR044505 -
Viun1g01957 860 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 221 314 IPR004193 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01957 Viun-Chr1 30917614 30920538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01957 54 859 Glycoside Hydrolase AT1G03310 55.772 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01957 K01214 - gmx:100777953 1383.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01957 1 30917614 30920538 Viun1g01957 1 30917614 30920538 ECH