LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g01942	ATGGGTAAGATTCTCCGAGAAACCGCGAAGCCGTCGGCGAATTCTTCATCGGCGTCCCCCTCTTCGGCGGCGCCCGCCACCACGTCTTCCACGTCGGTGACGGAGACGGTCAGGGGCTCGCACCAGTTCAAGATCACGGGCTACTCGCTCTCGAAGGGGATCGGGATTGGCAAGTACATGGCCTCCGACGTGTTTTCCGTTGGAGGGTACGATTGGGCGATTTATTTCTACCCCGATGGGAAGAGCGTGGAGGACAATGCGACCTACGTGTCGCTCTTCATCGCTCTGGCCAGCGACGGCACCGACGTTAGGGCACTTTTCGAGTTGACCCTTTTGGATCAGAGTGGCAAGGAGAGGCACAAGGTGCATAGCCATTTCGAGAGGACACTCGAAAGCGGGCCTTACACGTTAAAATACCGCGGTAGTATGTGGGGTTACAAAAGATTTTTTAAGAGAACAGCTCTAGAAACTTCGGACTACCTTAAAGATGATTGTCTATCTGTGAATTGTAGTGTTGGTGTTGTGAGGTCACGTACGGAAGGTCCTAAAATCTATACGATAGCAATACCGTCTTCTAGCATTGGTCATCAATTTGGGCAGCTACTTGAAAGTCGTAAAGGAAGTGATGTGAATTTTGAAGTGAACGGAGAATTTTTTTCTGCTCATAAATTGGTATTAGCAGCTCGGTCACCTGTTTTTAGAGCACAGCTTTTTGGTCCTATGAAAGATCAGAATACCCAGTGTATTAAAGTTGAAGACATGGAGGCTCCAGTTTTCAAGGCATTGCTTCATTTTATATACTGGGACTCACTGCCAGATATGCATGAGCTTACTGGGTTGAACTCAAAGTGGGCATCAACCTTGATGGCTCAGCATCTTCTAGCAGCAGCTGATCGATATGGTCTTGAGAGGCTTAGGCTGACGTGTGAAGCAAGTCTCTGTGAAGATGTAGCAATTAATACTGTGGCTACGACTCTAGCCTTGGCAGAGCAGCACCACTGTTTCCAGCTGAAAGCTGTTTGTCTCAAGTTTATTGCTACTTCTGAAAATCTTAGAGCTGTGATGCAAACTGACGGATTTGAGTACTTGAAGGAAAGTTGCCCATCTGTTCTGACTGAGCTATTGGAGTACGTGGCCAGATTTACTGAGCATTCGGACTTCATGTGCAAGCATAGGAATGAAGCACTGCTTGATGGCAGTGACATAAATGGGAGGCGGGTGAAGCAAAGGCTCTAG	1236	0.4806	MGKILRETAKPSANSSSASPSSAAPATTSSTSVTETVRGSHQFKITGYSLSKGIGIGKYMASDVFSVGGYDWAIYFYPDGKSVEDNATYVSLFIALASDGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVRSRTEGPKIYTIAIPSSSIGHQFGQLLESRKGSDVNFEVNGEFFSAHKLVLAARSPVFRAQLFGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMHELTGLNSKWASTLMAQHLLAAADRYGLERLRLTCEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIATSENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDFMCKHRNEALLDGSDINGRRVKQRL	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun1g01942	411	SMART	BTB_4	208	317	IPR000210	GO:0005515
	Viun1g01942	411	MobiDBLite	consensus disorder prediction	9	35	-	-
	Viun1g01942	411	FunFam	BTB-POZ and math domain 1	317	394	-	-
	Viun1g01942	411	FunFam	BTB-POZ and math domain 1	184	311	-	-
	Viun1g01942	411	ProSiteProfiles	MATH/TRAF domain profile.	38	172	IPR002083	GO:0005515
	Viun1g01942	411	SUPERFAMILY	POZ domain	185	315	IPR011333	-
	Viun1g01942	411	Gene3D	-	317	393	-	-
	Viun1g01942	411	Gene3D	Potassium Channel Kv1.1; Chain A	184	311	IPR011333	-
	Viun1g01942	411	CDD	MATH	39	172	IPR002083	GO:0005515
	Viun1g01942	411	SMART	math_3	43	155	IPR002083	GO:0005515
	Viun1g01942	411	Gene3D	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	37	176	IPR008974	GO:0005515
	Viun1g01942	411	PANTHER	BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1	27	375	IPR045005	GO:0016567
	Viun1g01942	411	CDD	BACK_AtBPM-like	314	377	IPR034090	-
	Viun1g01942	411	Pfam	BTB/POZ domain	199	315	IPR000210	GO:0005515
	Viun1g01942	411	CDD	BTB_POZ_BPM_plant	194	314	-	-
	Viun1g01942	411	ProSiteProfiles	BTB domain profile.	208	267	IPR000210	GO:0005515
	Viun1g01942	411	SUPERFAMILY	TRAF domain-like	35	174	-	-
	Viun1g01942	411	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g01942	Viun-Chr1	30868883	30873924	Dispersed/Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g01942	K10523		-	gmx:102668882	744.577

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun1g01942	1	30868883	30873924	Viun1g01942	1	30868883	30873924	ECH
	Viun1g01942	1	30868883	30873924	Viun7g01620	7	20925733	20931800	PCT