Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01909 ATGAAGCGAGTGTGGAGATTCTCTTCAGACGCAACGCGAGTTCAGTTGTTGCTCTTCCAACCCCACCTCAATGGATTCTCCAAGCCCAAACCCATTCCCTCCTTCTCCTCCGCGCTATCTTATCGCCAACTCAAGACGGTGTCAAACTTGTTCTCTGACATCATTCCATTGTTCACCGTCAAGGCTAGTTCTTCAATCAAAGAGGACCTCACCAACAACGTCACGATTCTCAGGGATGAGCTAATTCGGGAATCCTCCGACTCTGTTCGGGTTCAGAGCATTTTGGACGATAATTATGACCTTCTCAATCGCCGCTATCCCAAGGGATATGCTTTCTTCGAACTTATGTCATGCTTGGATTCAAATCCTTCCCTCGCTCTTCAGGTGTTTAATTGGAGAAGGAAAAGATGTAATGCTGAAAACCCTATGGATGCGAGTGAGTACTCAAAGGGTATAATTACTGCAGGTAGATCTGGGAATATTAATTATGCTGTTAAGCTCTTTAAGGAGGCTGCTACAAAAGGTCTCAAGACGACCGGCACTTACAATGCGCTAATGAGTGCCTTCTCGTTCAATGATTTTGCTGATAGCTGTCAGACCTTGTTTTGTGATCTGAAGAGGGATCCAACTTGCGATCCTTCTATTGTCACATACAACATTCTCATATCTAGTTTTGGTAGCTTGATGCTGGTTGATCACATGGAAGCAACATTCTGTGAGATACGAAAGTTAGACCTTGCCATGAACATCAGCACTTATAATAACTTAATTGCTGGATATATCACAGCGTGGATGTGGGATGATACGGAAAAGGTGTTTCAAATGTTGAAGTCGAGCCCTGTCCAGCCTAACATGAAAACCTACCTGCTAATGCTTCGCGGGTATGCAAATTCAGAAGTTCTGACTCAGATAAAGTTAAGAAGATAG 927 0.438 MKRVWRFSSDATRVQLLLFQPHLNGFSKPKPIPSFSSALSYRQLKTVSNLFSDIIPLFTVKASSSIKEDLTNNVTILRDELIRESSDSVRVQSILDDNYDLLNRRYPKGYAFFELMSCLDSNPSLALQVFNWRRKRCNAENPMDASEYSKGIITAGRSGNINYAVKLFKEAATKGLKTTGTYNALMSAFSFNDFADSCQTLFCDLKRDPTCDPSIVTYNILISSFGSLMLVDHMEATFCEIRKLDLAMNISTYNNLIAGYITAWMWDDTEKVFQMLKSSPVQPNMKTYLLMLRGYANSEVLTQIKLRR 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01909 308 NCBIfam pentatricopeptide repeat 216 249 IPR002885 -
Viun1g01909 308 Gene3D Tetratricopeptide repeat domain 116 306 IPR011990 GO:0005515
Viun1g01909 308 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Viun1g01909 308 Pfam Pentatricopeptide repeat domain 166 226 IPR002885 -
Viun1g01909 308 PANTHER EXPRESSED PROTEIN 41 303 IPR044179 GO:0003729
Viun1g01909 308 Pfam PPR repeat family 249 297 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01909 Viun-Chr1 30629358 30631118 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01909 157 298 Glycosyltransferase AT1G05670 27.972 1.57e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01909 - - gmx:100792116 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01909 1 30629358 30631118 Viun1g01909 1 30629358 30631118 ECH