Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01904 ATGAGTTCCGCAGAGGTTGCAGCACCAGCGAAGAAGGGTGGAAGGGGCAGGCCCAAGACAACAAAATCTGTTTCTCGTTCCTCCAAAGCCGGTCTACAGTTCCCCGTTGGCCGTGTTGCTCGCTACCTCAAAGCTGGTCGCTATGCGCAGCGCGTTGGATCCGGTTCCCCAGTTTACCTCACTGCGGTTCTTGAATACCTTGCCGCTGAGGTTTTGGAACTTGCGGGAAATGCTGCGAGGGACAACAAGAAGACGAGAATTATTCCAAGGCACATTCAGCTTGCGGTGAGGAACGACGAGGAACTGAGCAAACTCATGGGATCTGTAACCATTGCTAACGGTGGGGTTCTGCCCAAAATTCATCAGAATTTGCTGCCCAAGAAAGCTGGCAAGGGGAAAGCTGAAATTGGATCTGCTAGTCAGGAGTTTTAG 432 0.5208 MSSAEVAAPAKKGGRGRPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYLTAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIANGGVLPKIHQNLLPKKAGKGKAEIGSASQEF 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01904 143 PRINTS Histone H2A signature 51 66 IPR002119 GO:0000786|GO:0003677|GO:0030527
Viun1g01904 143 PRINTS Histone H2A signature 66 79 IPR002119 GO:0000786|GO:0003677|GO:0030527
Viun1g01904 143 PRINTS Histone H2A signature 80 94 IPR002119 GO:0000786|GO:0003677|GO:0030527
Viun1g01904 143 PRINTS Histone H2A signature 22 44 IPR002119 GO:0000786|GO:0003677|GO:0030527
Viun1g01904 143 PRINTS Histone H2A signature 108 126 IPR002119 GO:0000786|GO:0003677|GO:0030527
Viun1g01904 143 CDD H2A 16 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Viun1g01904 143 SUPERFAMILY Histone-fold 25 128 IPR009072 GO:0046982
Viun1g01904 143 ProSitePatterns Histone H2A signature. 30 36 IPR032458 -
Viun1g01904 143 MobiDBLite consensus disorder prediction 1 29 - -
Viun1g01904 143 Gene3D Histone, subunit A 10 136 IPR009072 GO:0046982
Viun1g01904 143 Coils Coil 140 143 - -
Viun1g01904 143 FunFam Histone H2A 11 135 - -
Viun1g01904 143 PANTHER HISTONE H2A 16 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Viun1g01904 143 Pfam C-terminus of histone H2A 100 133 IPR032454 -
Viun1g01904 143 Pfam Core histone H2A/H2B/H3/H4 10 97 IPR007125 GO:0003677
Viun1g01904 143 SMART h2a4 11 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01904 Viun-Chr1 30592458 30593194 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01904 K11251 - gmx:100818215 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01904 1 30592458 30593194 Viun1g01904 1 30592458 30593194 ECH