Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01795 ATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGACGCAGAAGCAGAGGCGCTCGAGGAACCCATGTCAAAGATTGTATCTGAACTCAAGTCTTCTCTAGTTCAATCAGATACTTGTGGATTTCTCTCTGATAACAGTGTACAGTTAGCAGTGGGAGCAGAGCAACTTGATCTGCTTGATAAAGCATGCTTTGGTCGACCTGTGAGAACAATTGAAAAGGACAAACACTGGTTTCAATTAAGTTTCGAGGAGGCATTCTACCTATGCTATTCCTTGAAATGCCTTAAGATTAATGGCAGTGGTACTGGTCCCCATAATGATGAAGAACTGTGGCATTACATGAAGTCGAAGAAAGATACATTCCCTTGTTTCTACAAGGCTTATTCCCACCTTCGAATGAAAAACTGGGTTGTGAGGTCAGGATCTCAGTACGGTGTAGACTTTGTTATCTATCGCCACCATCCATCTCGGGTCCATTCTGAGTATGGTGTGCTTGTTTTATCAGATGGGGAAGATAAAGATCTGAATGGAAGACTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTGTTGGAAGTGTTGCAAAAATCTTATTGGTTCTACATGTCAATAAAGTTGGTAACAACGAGTCTCCATTATGTCTTGCAAACTATACCGTTGAAGAGTGCACAATCACCAGATGGAGTCCAGAGCAGAACCGTGAAAAGATGTAG 726 0.4201 MAPRWKGKDAKAKKDAEAEALEEPMSKIVSELKSSLVQSDTCGFLSDNSVQLAVGAEQLDLLDKACFGRPVRTIEKDKHWFQLSFEEAFYLCYSLKCLKINGSGTGPHNDEELWHYMKSKKDTFPCFYKAYSHLRMKNWVVRSGSQYGVDFVIYRHHPSRVHSEYGVLVLSDGEDKDLNGRLRVWSDVHCTTRLVGSVAKILLVLHVNKVGNNESPLCLANYTVEECTITRWSPEQNREKM 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01795 241 PANTHER TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 3 73 IPR006676 GO:0000213|GO:0006388
Viun1g01795 241 SUPERFAMILY tRNA-intron endonuclease catalytic domain-like 123 209 IPR036167 GO:0006388
Viun1g01795 241 Pfam tRNA intron endonuclease, catalytic C-terminal domain 128 211 IPR006677 GO:0000213|GO:0006388
Viun1g01795 241 CDD tRNA-intron_lyase_C 128 212 IPR006677 GO:0000213|GO:0006388
Viun1g01795 241 Pfam tRNA intron endonuclease, N-terminal domain 44 114 IPR006678 GO:0000213|GO:0006388
Viun1g01795 241 FunFam tRNA-splicing endonuclease subunit Sen2-1 123 218 - -
Viun1g01795 241 Gene3D - 123 220 IPR011856 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01795 Viun-Chr1 29713248 29719353 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01795 K15322 - gmx:100810335 404.831