Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01793 ATGAAGAACCCACTTATCTTCCTCTTGTTCCTACTTCTCACCCAATCCCTTCTCGCCACGTCATCACCGTTAAACCCGATCCCAATCAACCTCTCCGTCGCCGACTTCGGCGCCACCGGCGACGGCAGCTGCTACGATACCGCACCGATCCAGTCGGCCATCAACTCCTGTCCGGAGGGCGGTCCCTGCCACGTAATCTTCCCGGCGCCGGGAAAGTACCTGACGGCCACCGTGTTCCTGAAATCCGGCGTGGTGCTGGTCGTGGAGCCTGGTGCCACCATCCTGGGCGGCGCCAGGCTTGAGGACTACCCGGAGGAGTTCTGGCGGTGGTACGTGGTGGTGGCGGAGAACGCGACGAACGTGGGAATCCGCGGCGGCGGAGTGGTGGACGGTCAGGCTGCGAAGTTCGTAGTGAGGGAAGATCCGAGAAAGAACGTGATGGTTAGTTGGAACCAAACTGGCGCTTGCTTGGGAGATGAATGCAGACCTAGACTCATTGGATTCATTGGTTGCAACAATGTTGAAGTTTCTAACATTACTCTCAACCATCCTGCTTATTGGTGCTTACACTTGGTCCGGAGTAATAACATATCCATTAAAGATATTGCAATTAATGGGGACTTTAACATACCAAACAATGACGGGATTGACATTGAGGACTCAAACAACACAGTAATCACTCGATGCCACATCGATACTGGGGATGATGCAATCTGTCCAAAGTCATCCACAGGTCCTGTTTACAACCTTACAGTCACCGACTGTTGGATTCGATCCAAATCTTCTGCAATTAAACTTGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTTGTGTTTGATAATATCACTATTGTTGATTCTCATAGAGGGATTGGATTCCAGATCCGTGATGGAGGAAATGCAAGTGACATTGTATTCTCAAATATTAATATCAGCACAAGATATTATGACCCGTTATGGTGGGGTAGAGCAGAGCCTATCTATGTCACGAGTTGCCCCCGAGACTCAACCTCAAAGGAGGCTTCAATATCTGATGTAACTTTCATTAACATCACTGCAAATTCTGAAAATGGCATCTTCCTGTCTGGTTCAAAGAGAGGATTGCTTAGAAACTTGAGATTCATCAACATGGACATTACATACAGAAGGTTCACCAATTATACTGGTGGGTTATTGGACTATAGGCCAGGATGCCAAGAGTTAGTTGAACACAGGACTGCGGGCATAATGATGGAGTACATCGAAGGGCTTGAGGTTAAAAATGTTGAAATTAGATGGTCAAACAATGAACTAGAGCAGTGGAATAATCCTTTAGAGTTCAGACCGTCTACTGTGAATAATATATCTTTCCTTAATTTTAGTTCTGGTTTGTATACAGATAGCAAATTAAATTATTAA 1398 0.4642 MKNPLIFLLFLLLTQSLLATSSPLNPIPINLSVADFGATGDGSCYDTAPIQSAINSCPEGGPCHVIFPAPGKYLTATVFLKSGVVLVVEPGATILGGARLEDYPEEFWRWYVVVAENATNVGIRGGGVVDGQAAKFVVREDPRKNVMVSWNQTGACLGDECRPRLIGFIGCNNVEVSNITLNHPAYWCLHLVRSNNISIKDIAINGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPVYNLTVTDCWIRSKSSAIKLGSASWFDFKHFVFDNITIVDSHRGIGFQIRDGGNASDIVFSNINISTRYYDPLWWGRAEPIYVTSCPRDSTSKEASISDVTFINITANSENGIFLSGSKRGLLRNLRFINMDITYRRFTNYTGGLLDYRPGCQELVEHRTAGIMMEYIEGLEVKNVEIRWSNNELEQWNNPLEFRPSTVNNISFLNFSSGLYTDSKLNY 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01793 465 SMART pbh1 301 323 IPR006626 -
Viun1g01793 465 SMART pbh1 171 193 IPR006626 -
Viun1g01793 465 SMART pbh1 338 363 IPR006626 -
Viun1g01793 465 SMART pbh1 194 220 IPR006626 -
Viun1g01793 465 SMART pbh1 221 242 IPR006626 -
Viun1g01793 465 SMART pbh1 247 268 IPR006626 -
Viun1g01793 465 SUPERFAMILY Pectin lyase-like 8 395 IPR011050 -
Viun1g01793 465 PANTHER PECTIN LYASE-RELATED 26 423 - -
Viun1g01793 465 Pfam Glycosyl hydrolases family 28 111 381 IPR000743 GO:0004650|GO:0005975
Viun1g01793 465 Gene3D - 18 390 IPR012334 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01793 29 459 Glycoside Hydrolase AT3G57790 67.574 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01793 - - gmx:100794954 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01793 1 29678852 29680996 Viun1g01793 1 29678852 29680996 ECH