Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01762 ATGGCCCTCCTCAAACACCTTCTCTTCTCCTTCCCCATTTTCATCATTTCTTTTGTTTTTTGTTATGGCAGCTTGCAAGAGGACCCACTCACCAATATATATGTTCATCATTCACCTTCCATTGATGATGGTGAGACATTATTGAAGAACTTCAACAAGCAAAGCACAAATGTTTTGAGCTTCAACACGTTTGAGAAGCGTAGCTCCCTTAAAAAGGTTAATGTCAATGATTATGGAGCTAAGGCGAATGGTGATAGTGATGACTCAGAGGCTTTCAAGAAGGCTTGGGATGAGGTATGTACTTCTGGAGAAGCAATTCTTGTGGTGCCTGAGGACAATTATCTGCTCAAACCAATAAGATTCTCTGGTCCTTGCGAACCTAACATTGAAGTTCAGATTTCTGGAATCCTTGAAGCATCAGATGATCCATCAGATTACGAGGAAGACAGCAAACACTGGCTTGTGTTTGACAAAATTGATAACCTGTTTGTTTATGGTGGTGGAACCCTCGATGGAAACGGCAGAATATGGTGGAAAAACTCATGCAAAAAGAACAAAAAGCGATCTTGCAAGGATGCTCCAACAGCTCTGACTTTCGATCGTTGTGAGAACTTGACAGTTGAGAACTTGAACATAAAAAATGCTCAACAAATCCACGTTTCATTCCAAGACTCCGAGAACGTTAAGGTTTCTGGCCTTAGCGTGATTGCACCAGAGGATAGCCCCAACACCGACGGGATTCATGTTACGAAAACACAAAACATCCAAATCTCAGATTCTGTCATAGGAACTGGTGATGATTGTATATCTATTGTACATGGATCTAAAAATGTAGAAGCTACAAACATTACATGTGGACCGGGCCATGGTATCAGTATTGGAAGCTTAGGAGCAGGAAAATCCAAGGACATTGTTTCAGGCATAAAAGTGAACGGAGCCAAGATTTTTGGAACTAAAAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGTGACATAAAGTTTCAGAACATAGAGATGACCAATGTGACCAACCCCATAATAATAGATCAGAATTACTGTGACAAGAAAAAAAGACCTTGCCAAAAAGCGGGTTCGGAGAAATCCGCTATAGAAATCAAGAATGTGGTGTACGAGAACATAAGTGGTACAAGTGCTTCTGAAGTAGCTGTGGATTTTGACTGCAGTGAGAAATTTTTGTGCAAGAAGGTAACGTTGCAGAACATAGACCTTGCATGTGAAGGAGGAGATGATGCTGAGGCTCGGTGTAACAATGTTAAGTTATCTTACATTGGACACGTTAAGCCTCGTTGCACTTCACAAAAGAAAAAGACCTCTTCTGTTTTTACTTCCATGGGGAAATACTTCTCATGGTTTATATGA 1395 0.4086 MALLKHLLFSFPIFIISFVFCYGSLQEDPLTNIYVHHSPSIDDGETLLKNFNKQSTNVLSFNTFEKRSSLKKVNVNDYGAKANGDSDDSEAFKKAWDEVCTSGEAILVVPEDNYLLKPIRFSGPCEPNIEVQISGILEASDDPSDYEEDSKHWLVFDKIDNLFVYGGGTLDGNGRIWWKNSCKKNKKRSCKDAPTALTFDRCENLTVENLNIKNAQQIHVSFQDSENVKVSGLSVIAPEDSPNTDGIHVTKTQNIQISDSVIGTGDDCISIVHGSKNVEATNITCGPGHGISIGSLGAGKSKDIVSGIKVNGAKIFGTKNGVRIKTWQGGSGSASDIKFQNIEMTNVTNPIIIDQNYCDKKKRPCQKAGSEKSAIEIKNVVYENISGTSASEVAVDFDCSEKFLCKKVTLQNIDLACEGGDDAEARCNNVKLSYIGHVKPRCTSQKKKTSSVFTSMGKYFSWFI 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01762 464 PANTHER - 72 430 - -
Viun1g01762 464 ProSitePatterns Polygalacturonase active site. 282 295 IPR000743 GO:0004650|GO:0005975
Viun1g01762 464 SUPERFAMILY Pectin lyase-like 70 447 IPR011050 -
Viun1g01762 464 FunFam Polygalacturonase QRT2 58 443 - -
Viun1g01762 464 SMART pbh1 334 355 IPR006626 -
Viun1g01762 464 SMART pbh1 202 222 IPR006626 -
Viun1g01762 464 SMART pbh1 305 326 IPR006626 -
Viun1g01762 464 SMART pbh1 225 251 IPR006626 -
Viun1g01762 464 SMART pbh1 252 273 IPR006626 -
Viun1g01762 464 Pfam Glycosyl hydrolases family 28 106 431 IPR000743 GO:0004650|GO:0005975
Viun1g01762 464 Gene3D - 55 461 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01762 Viun-Chr1 29360190 29363023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01762 13 443 Glycoside Hydrolase AT3G07970 48.165 4.65e-142 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01762 K01184 - gmx:100797601 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01762 1 29360190 29363023 Viun1g01762 1 29360190 29363023 ECH