Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01673 ATGTCTCTTTTGCCTCGTCTTCGTGTCTTCGCCACGCCTTTACTTTCATCTTCTCTCCTCTCCCCCTTCTCTCAGAATGGAGGTAGACAACTGATGACAAGAATTGGCATCAATACCTGCTCGCTTTCTTCCACAGCAGAGAGAGCCAATGCACTTTGCATGGCTGTATCACAGCTTGCTAGTGAGTTTAGCAAGGAATCTATGTTGTCTCTGCATAAGTTTTTTGGTGTACGCCGTGCTCGTGTGATATCTACAGGCTCCTTGAAGCTTGACCTAGCCCTGGGAATAGGAGGATTGCCAAAGGGTAGAATGGTGGAAATTTATGGACGAGAAGCAGCTGGTAAGACTACACTTGCTCTTCAAATTATTAAAGAAGCTCAAAAACTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCTCTGGACTTCTCACTTGTGGAATCGATAGGTGTAAATACTGAAAACCTTCTCGTATCACACCCTGATTGTGCTGAAAATTTGTTAAGCATGGTTGATACATTAACAAAAAGTGGAGCTGTAGATGTGATTGTGATTGATAGTGTTGCTGCCCTCATCCCCAAATGCGAACTTGATCAATTAGGAGTTAGTCCTAAACGAGATTATCAATCACGAATGATGACTCAAGCACTGCGGAAAATTCACTATTCATTATCTCACTCTCAAACTCTCATTATTTTCATTAATCAGATTAGATTGAGTTCAAAAACCGTCAAGGAACATGGATCTGTGGAAGAAGTCACTTGTGGTGGAAATGCTTTGAGATTCTATGCAGCCGTTCGTTTGAGACTTTCAAGAATAAGATTGATCAAAACTGAGGATAAGGTAGAGGGTGTTCTGATCTGTGCACAAGTGGTGAAAAATAAACTAGCACCAGCAGCAACGAAAAGGGCTGAACTGGGTATCAAGTTTGGAAGAGGCTTTTGCCATGAGTCAGAGGTCTTAGATTTGGCCTGTGAACATGGAACAATTGTGAAAGATGAGGGAAGCTACATTATTGAAGGGCAGAGTTTTGATAGTAGAGAAGCAGCTGAACTGTTTTTGGCTCAAAATGATGCCATTTGTGACAAGTTGGTCAAGGATATGAGGAGACTTTATTTTTAA 1125 0.4133 MSLLPRLRVFATPLLSSSLLSPFSQNGGRQLMTRIGINTCSLSSTAERANALCMAVSQLASEFSKESMLSLHKFFGVRRARVISTGSLKLDLALGIGGLPKGRMVEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVENALDFSLVESIGVNTENLLVSHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALIPKCELDQLGVSPKRDYQSRMMTQALRKIHYSLSHSQTLIIFINQIRLSSKTVKEHGSVEEVTCGGNALRFYAAVRLRLSRIRLIKTEDKVEGVLICAQVVKNKLAPAATKRAELGIKFGRGFCHESEVLDLACEHGTIVKDEGSYIIEGQSFDSREAAELFLAQNDAICDKLVKDMRRLYF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01673 374 Pfam recA bacterial DNA recombination protein 51 315 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun1g01673 374 PANTHER RECA 43 372 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun1g01673 374 ProSiteProfiles RecA family profile 1. 79 238 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Viun1g01673 374 SMART AAA_5 101 281 IPR003593 GO:0016887
Viun1g01673 374 Gene3D - 78 372 IPR027417 -
Viun1g01673 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 303 IPR027417 -
Viun1g01673 374 CDD RecA 82 317 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun1g01673 374 ProSiteProfiles RecA family profile 2. 249 320 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Viun1g01673 374 ProSitePatterns recA signature. 260 268 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Viun1g01673 374 PRINTS RecA protein signature 209 238 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun1g01673 374 PRINTS RecA protein signature 137 166 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun1g01673 374 PRINTS RecA protein signature 171 200 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun1g01673 374 PRINTS RecA protein signature 257 285 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun1g01673 374 PRINTS RecA protein signature 291 320 IPR013765 GO:0003697|GO:0005524|GO:0006281
Viun1g01673 374 PRINTS RecA protein signature 344 361 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01673 Viun-Chr1 28497849 28503698 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01673 - - var:108318700 624.009