Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01648 ATGAAGCTCATTAGCATCAACCCCAAAAACCTCAAACTCAGTCCCAAACACCTCTTTCGCTCCAAAAAGGACCGATCTTTATCCCGATCCGACCCACCCTCTTTCGGATCCTCCTCCTCCGATGACTCCACCCACAAGCCCGCCGCACCCAGCGCCGCCGGCTCTCTCACTCCCACCAGCGTCCTCCCCGGCGTCTCCGGCGACTGGTCCGACGTCACTGTCGACGTTCGGTGGGACCTCGCCCAGGCCTTCCGCCTAATCGACCGAGACAACGACGGCGTCGTTTCGCGCCAGGACCTCGAGGCAATCCTCACGCGCCTAGGCGCGTCCGACGTCGCGCTCATGCTCAGCGAAGTCGACGGCGGCGCCGGAGGCTGCATCACAGTGGAGGCCCTCATGAACCACATCGGGTCGGGTCCAGAGTCCGGGTCGGATCCGGAGGAACTTAAGGAGGCCTTCGCGGTGTTCGACACAGATCGCGACGGGAGGATCTCGGCGGAGGAGTTGCTTCGGGTGTTCAGAGCGATCGGCGACGAGCGGTGCACGTTAGAGGAGTGCCGGCGCATGATAGAGGGTGTGGACAGGAACGGGGATGGATTCGTGTGCTTCGAGGACTTTTCTCGTATGATGGAACTGCATCGGTGA 645 0.6202 MKLISINPKNLKLSPKHLFRSKKDRSLSRSDPPSFGSSSSDDSTHKPAAPSAAGSLTPTSVLPGVSGDWSDVTVDVRWDLAQAFRLIDRDNDGVVSRQDLEAILTRLGASDVALMLSEVDGGAGGCITVEALMNHIGSGPESGSDPEELKEAFAVFDTDRDGRISAEELLRVFRAIGDERCTLEECRRMIEGVDRNGDGFVCFEDFSRMMELHR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01648 214 ProSiteProfiles EF-hand calcium-binding domain profile. 181 214 IPR002048 GO:0005509
Viun1g01648 214 Pfam EF-hand domain pair 147 210 IPR002048 GO:0005509
Viun1g01648 214 SMART efh_1 148 176 IPR002048 GO:0005509
Viun1g01648 214 SMART efh_1 185 213 IPR002048 GO:0005509
Viun1g01648 214 SMART efh_1 79 107 IPR002048 GO:0005509
Viun1g01648 214 ProSitePatterns EF-hand calcium-binding domain. 88 100 IPR018247 -
Viun1g01648 214 MobiDBLite consensus disorder prediction 30 46 - -
Viun1g01648 214 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 148 211 - -
Viun1g01648 214 ProSitePatterns EF-hand calcium-binding domain. 157 169 IPR018247 -
Viun1g01648 214 Gene3D - 74 132 - -
Viun1g01648 214 Pfam EF-hand domain 80 108 IPR002048 GO:0005509
Viun1g01648 214 ProSitePatterns EF-hand calcium-binding domain. 194 206 IPR018247 -
Viun1g01648 214 ProSiteProfiles EF-hand calcium-binding domain profile. 144 179 IPR002048 GO:0005509
Viun1g01648 214 Gene3D - 133 214 - -
Viun1g01648 214 CDD EFh 79 174 IPR002048 GO:0005509
Viun1g01648 214 CDD EFh 148 210 IPR002048 GO:0005509
Viun1g01648 214 MobiDBLite consensus disorder prediction 15 60 - -
Viun1g01648 214 FunFam Probable calcium-binding protein CML35 132 214 - -
Viun1g01648 214 ProSiteProfiles EF-hand calcium-binding domain profile. 79 110 IPR002048 GO:0005509
Viun1g01648 214 SUPERFAMILY EF-hand 71 212 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01648 Viun-Chr1 28264012 28265089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01648 12 210 EF-hand Containing Proteins AT2G41410 54.854 8.55e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01648 K13448 - gmx:100815559 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01648 1 28264012 28265089 Viun1g01648 1 28264012 28265089 ECH