Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01630 ATGGCAGCTGAGAACGGGTTGGAGTTGGAGAGAGTGGGAGGAGAAGGAGAAGAACAAGAAGAAGCAGAAGAAGTCAAAGGTTGTTTGAGCAAGTTCATCGATGATGGCACCGTTGAAACTCACAGATACTACTTGTCTCGCAGAACCACTCTGGAAATGCTCAGAGACAGAGGTTACTCCATTCCCTCCACCGAAATCGACCTTTCTCTCTCCCAATTCCGCAACATGCACGGCCATTCCCCCGACCCTGACCGTCTCCGCCTCTCCCTCACTCACGCCACCAACCCTTCCAAAAGGATTTTAGTCATTTTCTGCGGGCCAGGTTCTGTGAAAGTTACTGCCATTCGGAACATTGCGGGGCAGATTGTTAATAGAGACACTTTGAGTGGTCTTATTTTGATAGTGGAGAATCATGTTACTAGCCAGGCCTTGAAAGCCGTTGCTCTTTTTTCCTTCAAGGTTGAAATTTTCCAGATCACAGACTTGCTTGTTAATATTACAAAGCATGTGTTGAAGCCAAAGCATCAGGTGCTGACTGATAGGCAGAAGAAAAATCTCCTGAAGAAGTTCAATATAGAAGAAAAGCAGCTTCCCCGCATGCTACAGAGTGATGCAGTTGCACGATATTATGGACTTGAGAGGGGCCAAGTAGTTAAAGTTACCTATAGTGGTGAAATCACCCAGATGCATGTCACGTATCGATGTGTGTGGTGA 714 0.4636 MAAENGLELERVGGEGEEQEEAEEVKGCLSKFIDDGTVETHRYYLSRRTTLEMLRDRGYSIPSTEIDLSLSQFRNMHGHSPDPDRLRLSLTHATNPSKRILVIFCGPGSVKVTAIRNIAGQIVNRDTLSGLILIVENHVTSQALKAVALFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQLPRMLQSDAVARYYGLERGQVVKVTYSGEITQMHVTYRCVW 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01630 237 Pfam RNA polymerase Rpb5, N-terminal domain 39 121 IPR005571 GO:0003677|GO:0003899|GO:0006351
Viun1g01630 237 Pfam RNA polymerase Rpb5, C-terminal domain 164 236 IPR000783 GO:0003677|GO:0003899|GO:0006351
Viun1g01630 237 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 38 165 IPR036710 GO:0003677|GO:0003899|GO:0006351
Viun1g01630 237 Gene3D - 34 161 IPR036710 GO:0003677|GO:0003899|GO:0006351
Viun1g01630 237 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC1 162 237 - -
Viun1g01630 237 SUPERFAMILY RPB5-like RNA polymerase subunit 162 237 IPR035913 -
Viun1g01630 237 MobiDBLite consensus disorder prediction 1 23 - -
Viun1g01630 237 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 37 237 IPR014381 GO:0003899
Viun1g01630 237 Gene3D - 162 237 IPR035913 -
Viun1g01630 237 PIRSF RPB5 32 237 IPR014381 GO:0003899
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01630 Viun-Chr1 28068758 28072762 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01630 K03013 - gmx:100306033 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01630 1 28068758 28072762 Viun1g01630 1 28068758 28072762 ECH