Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01621 ATGGCGCTGCACTCCGTCTCTTCCGTCCCACACGTGCTGCGCCTCTCTGAGCCATTCCCTTCCCTCCACAACGCTCATCTCCTCCTCGACCTCGTCCCTCTCCGCCGCAAACCTAAGCGTCGAACTCGCAAACTGAGAGCGTTCCCCTCGCCGTCACCGCTTCCTCGTTCAGCCGTCAAAGCTGTTCTCCATATCGACCGCACAACCGACAATCGTCTCCATGCTTCGTCTGCTTCCTCGTCTTCTGATTCCAAACCGCAGGTTGCAAACTTGGAGGACATACTATCAGAGAGGGGAGCCTGTGGGGTTGGATTCATTGCCAATTTGGAAAATAAGGGATCACATGAGATTGTCAAGGATGCTTTAAATGCTTTAAGTTGTATGGAACATCGTGGTGGTTGTGGAGCTGATAATGATTCTGGGGATGGTTCAGGGCTGATGACTGCAGTTCCATGGGATCTACTTGACAATTGGGCCAACAAACAAGGGATCGCTTCCTTTGATAAATTGCATACTGGTGTTGGAATGGTTTTCTTACCCAAAGATGCACAACTTCTCAATGAGGCGAAGAAAGTTATCATAAATATTTTTCGGCAAGAAGGTCTTGAGGTTCTTGGTTGGAGGCCTGTCCCTGTAAATACTTCTGTTGTTGGTTATTATGCAAAGGAGACCATGCCCAGTATACAACAGGTATTTGTTAAGATTGTGAAAGAAGAAAATGTTGATGACATTGAACGAGAACTGTACATCTGTCGGAAATTGATTGAAAAAGCAGTAAGCTCAGAAAGTTGGGGAAATGAGCTTTATTTCTGTTCTTTATCCAATCAAACCATAGTTTACAAAGGGATGCTTCGCTCAGAAGTGCTTGGGTTGTTTTATTCTGATCTTCAAAATGATCTTTACAAGTCCCCTTTTGCCATTTATCATCGAAGGTACAGCACAAATACCAGTCCCAGATGGCCTCTTGCACAACCTATGAGGCTTCTTGGTCATAATGGAGAAATCAACACCATACAGGGGAACTTGAACTGGATGCAATCACGAGAACCATCATTGAAATCACCTGTATGGCGAGGCCGTGAAAATGAAATTCGTCCTTATGGAAATCCAAAGGCATCAGACTCAGCAAATCTTGACAGTGCTGCAGAATTATTGATAAGAAGTGGTCGAAGTCCCGAGGAAGCTATGATGATTCTTGTTCCAGAGGCTTATAAAAATCATCCAACTCTGACAATCAAATATCCTGAGGCGCTTGATTTCTATGACTACTACAAGGGTCAGATGGAAGCTTGGGATGGACCAGCCTTGCTTTTGTTCAGTGATGGGAAAACTGTTGGTGCATGCCTTGATCGTAATGGACTTAGACCTGCAAGGTATTGGCGAACATCAGACAATATGGTCTATGTTGCCTCAGAGGTTGGTGTTGTGCCAGTGGATGAATCAAAGGTTGTCTTGAAAGGCCGCTTAGGTCCAGGCATGATGATAACGGTTGATTTAACTGGTGGTCAGGTCTATGAGAATACAGAGGTCAAAAAACGAGTAGCTTTATCAAACCCATACGGGAAGTGGATCCAGGAAAATTTGCGCTCCTTGAAGCCTGGGAACTTCCTTTCAGCCTCTCTGATGGACAATGAGGCAGTATTAAGAAACCAACAGGCATTTGGCTACTCTAGTGAAGATGTCCAAATGGTGATTGAAAGTATGGCTTCTCAAGGAAAGGAGCCCACATTTTGTATGGGAGATGATATTCCCCTGGCAGCATTGTCTCAGAAACCTCACATGCTTTTTGATTATTTCAAGCAACGGTTTGCACAGGTTACGAATCCTGCAATTGATCCTCTTCGAGAAGGATTGGTTATGTCTCTTGAAGTGAATATAGGGAAAAGAGGGAATTTATTGGAAGTTGGGCCAGATAATGCTTCACAGGTTATGTTGTCCAGTCCAGTATTGAACGAAGGGGAGCTTGAATCATTACTAAAAGATTCCCAGTTAAAACCACAAGTGTTACCTGCATTTTTTGATATAACTAAGGGCATTGAAGGTTCTTTGGAGAAAGCATTAAATAAGCTTTGCGAGGCTGCAGATGAAGCTGTCAGAAACGGTTCCCAGTTGCTTGTTCTATCAGACCGTTCAGAGACACTGGAACCAACACATCCGGCAATTCCAATTCTTCTTGCTGTTGGTACTGTTCATCAGCATCTTATCTTGAATGGCCTGCGGACATCAGCTTCAATTATAGCAGATACTGCCCAGTGCTTTAGCACTCATCAGTTTGCATGCTTAATAGGATATGGTGCAAGTGCTGTGTCTCCATACTTGGCATTGGAGACATGTCGGCAGTGGCGTTTGAGTAATAAAACTGTTAATTTGATGAGGAATGGAAAGATGCCCACTGTATCAATTGAACAGGCCCAAAAGAACTATTGCAAAGCTGTCAAAGCTGGTCTTCTTAAAATTCTTTCCAAAATGGGCATCTCATTGCTTTCAAGTTACTGTGGTGCACAAATATTTGAAGTCTATGGATTAGGAAAGGAAGTTGTTGATCTTGCATTCAGAGGAAGTGTGTCGAAAATTGGTGGATTGACTTTTGATGAGGTGGCAAGAGAGACTTTGTCTTTCTGGGTGAAGGCATTCTCTGAAGATACAGCTAAAAGGTTGGAAAATTTTGGATTTATACAGTCCAGACCAGGAGGGGAGTATCATGCAAATAACCCAGAAATGTCAAAGTTGCTCCACAAAGCTGTTCGTCAGAAAAGTCAAAGCGCCTTTTCAGTTTATCAGCAATATTTGGCTAATCGACCTGTGAATGTTCTCCGTGATCTTCTTGAATTCAAGAGTGATCGTGCTGCAATTCCTGTGGGGAAGGTTGAACCTGCTTCGTCTATTGTGCAAAGGTTTTGCACTGGGGGAATGTCACTTGGAGCTATTTCCAGAGAAACTCATGAAGCAATCGCAGTTGCCATGAACAGATTAGGTGGAAAATCAAATTCAGGGGAAGGTGGCGAGGATCCTATTCGCTGGAAACCACTTACAGATGTTGTTGATGGTTACTCTCCCACACTTCCACACCTTAAGGGTCTTCAAAATGGGGATATTGCTACTAGTGCCATAAAGCAGGTTGCTTCAGGAAGGTTTGGTGTCACTCCAACATTCTTGGCAAATGCTGATCAGTTAGAAATCAAGATTGCACAAGGTGCAAAACCCGGTGAAGGTGGACAATTGCCTGGAAAAAAAGTTAGCATGTATATTGCAAGGTTGAGAAATTCTAAACCGGGAGTTCCTCTTATATCTCCACCTCCTCATCATGACATTTATTCTATTGAGGACCTTGCTCAATTGATCTTTGATCTTCATCAGGTGAATCCAAAGGCAAAGGTGTCCGTAAAACTGGTGGCTGAAGCTGGAATTGGCACTGTTGCATCTGGAGTTGCAAAGGGCAATGCTGACATTATACAGATTTCAGGACATGATGGGGGAACTGGAGCAAGCCCTATAAGTTCCATCAAGCATGCAGGAGGTCCTTGGGAACTTGGTCTTACAGAATCTCACCAGACACTGATTGAAAATGGACTTAGAGAAAGGGTTATTCTCAGAGTTGATGGTGGATTTAGAAGCGGAGTTGATGTCATGATGGCAGCAATAATGGGTGCTGATGAATATGGCTTTGGTTCTGTTGCAATGATCGCTACTGGATGTGTTATGGCCCGCATTTGCCACACCAATAATTGCCCAGTTGGTGTTGCTAGTCAGAGGGAAGAATTGCGGGCTCGCTTTCCTGGTGTACCTGGTGATCTTGTCAACTACTTTTTGTATGTAGCTGAGGAGGTAAGAGGCATATTGGCACAACTAGGGTATGATAAATTGGATGATGTTATTGGCCGGACTGATTTGTTGCAACCAAGAGACATATCTCTAGCAAAAACTCAGCATCTAGATCTGAGTTATATTCTCTCTAGTGCTGGATTATCTAAATGGAGCAGTACAGAAATTAGGAACCAGGAGCCTCATACCAATGGTCCTGTTCTGGATGATGGTTTGCTAGCAGATCCAGAGGTTGCAGATGCCATTCAAAATGAAAAGGTGGTTAATAAGACTGTAAAAATATACAACATTGATCGAGCTGTTTGTGGGCGTATAGCTGGTGTCATTGCAAAGAAGTATGGTGACACTGGTTTTGCAGGACAGTTGAATATAACTTTTACAGGAAGTGCTGGGCAGTCATTTGCTTGCTTTCTGACACCTGGAATGAACATTCGACTGGTAGGAGAGGCTAATGATTATGTTGGGAAGGGCATTGCTGGAGGTGAGTTGGTTATCACTCCTGTTGACAAGACGGGGTTTGAACCTGAGGATGCAGCTATTGTAGGGAACACTTGCTTGTATGGGGCAACTGGTGGACAGGTCTTCGTCAGAGGGAAAGCTGGGGAAAGATTTGCTGTCAGAAACTCTCTTGCTGAAGCTGTGGTTGAAGGCACAGGAGATCATTGCTGTGAGTACATGACAGGTGGTTGTGTGGTTGTCTTGGGAAAAGTGGGTAGAAATGTGGCTGCTGGAATGACGGGAGGATTGGCTTACATTCTTGATGAGGACGACACTCTCATTCCCAAGGTAAACAGAGAAATTGTAAAAATCCAACGGGTATCAGCCCCTGTTGGGCAGATGCAACTGAAGAGCCTGATTGAAGCTCATGTTGAAAAAACCGGTAGTACCAAAGGTGCGGCTATTCTGAAGGATTGGGACAAGTATTTAGCACTGTTTTGGCAGCTGGTTCCACCTAGTGAAGAGGATACGCCTGAGGCAAATGCCAAGTATGACACAACTACCGCAGAGCAGGTGACTTTTCAGTCTGCTTAG 4854 0.4415 MALHSVSSVPHVLRLSEPFPSLHNAHLLLDLVPLRRKPKRRTRKLRAFPSPSPLPRSAVKAVLHIDRTTDNRLHASSASSSSDSKPQVANLEDILSERGACGVGFIANLENKGSHEIVKDALNALSCMEHRGGCGADNDSGDGSGLMTAVPWDLLDNWANKQGIASFDKLHTGVGMVFLPKDAQLLNEAKKVIINIFRQEGLEVLGWRPVPVNTSVVGYYAKETMPSIQQVFVKIVKEENVDDIERELYICRKLIEKAVSSESWGNELYFCSLSNQTIVYKGMLRSEVLGLFYSDLQNDLYKSPFAIYHRRYSTNTSPRWPLAQPMRLLGHNGEINTIQGNLNWMQSREPSLKSPVWRGRENEIRPYGNPKASDSANLDSAAELLIRSGRSPEEAMMILVPEAYKNHPTLTIKYPEALDFYDYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARYWRTSDNMVYVASEVGVVPVDESKVVLKGRLGPGMMITVDLTGGQVYENTEVKKRVALSNPYGKWIQENLRSLKPGNFLSASLMDNEAVLRNQQAFGYSSEDVQMVIESMASQGKEPTFCMGDDIPLAALSQKPHMLFDYFKQRFAQVTNPAIDPLREGLVMSLEVNIGKRGNLLEVGPDNASQVMLSSPVLNEGELESLLKDSQLKPQVLPAFFDITKGIEGSLEKALNKLCEAADEAVRNGSQLLVLSDRSETLEPTHPAIPILLAVGTVHQHLILNGLRTSASIIADTAQCFSTHQFACLIGYGASAVSPYLALETCRQWRLSNKTVNLMRNGKMPTVSIEQAQKNYCKAVKAGLLKILSKMGISLLSSYCGAQIFEVYGLGKEVVDLAFRGSVSKIGGLTFDEVARETLSFWVKAFSEDTAKRLENFGFIQSRPGGEYHANNPEMSKLLHKAVRQKSQSAFSVYQQYLANRPVNVLRDLLEFKSDRAAIPVGKVEPASSIVQRFCTGGMSLGAISRETHEAIAVAMNRLGGKSNSGEGGEDPIRWKPLTDVVDGYSPTLPHLKGLQNGDIATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSMYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVAEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTESHQTLIENGLRERVILRVDGGFRSGVDVMMAAIMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNYFLYVAEEVRGILAQLGYDKLDDVIGRTDLLQPRDISLAKTQHLDLSYILSSAGLSKWSSTEIRNQEPHTNGPVLDDGLLADPEVADAIQNEKVVNKTVKIYNIDRAVCGRIAGVIAKKYGDTGFAGQLNITFTGSAGQSFACFLTPGMNIRLVGEANDYVGKGIAGGELVITPVDKTGFEPEDAAIVGNTCLYGATGGQVFVRGKAGERFAVRNSLAEAVVEGTGDHCCEYMTGGCVVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNREIVKIQRVSAPVGQMQLKSLIEAHVEKTGSTKGAAILKDWDKYLALFWQLVPPSEEDTPEANAKYDTTTAEQVTFQSA 1617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01621 1617 FunFam Glutamate synthase, large subunit 101 533 - -
Viun1g01621 1617 Pfam Conserved region in glutamate synthase 901 1285 IPR002932 GO:0006537|GO:0015930|GO:0016638
Viun1g01621 1617 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 101 500 IPR017932 -
Viun1g01621 1617 Pfam GXGXG motif 1367 1549 IPR002489 GO:0016491
Viun1g01621 1617 Gene3D - 1322 1598 IPR036485 GO:0016491
Viun1g01621 1617 Pfam Glutamine amidotransferases class-II 101 523 IPR017932 -
Viun1g01621 1617 CDD GltS 101 518 - -
Viun1g01621 1617 CDD GltS_FMN 904 1299 IPR002932 GO:0006537|GO:0015930|GO:0016638
Viun1g01621 1617 Gene3D Aldolase class I 527 893 IPR013785 -
Viun1g01621 1617 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 890 1301 - -
Viun1g01621 1617 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 103 1599 - -
Viun1g01621 1617 SUPERFAMILY FMN-linked oxidoreductases 544 1321 - -
Viun1g01621 1617 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 101 527 IPR029055 -
Viun1g01621 1617 Gene3D Aldolase class I 575 1301 IPR013785 -
Viun1g01621 1617 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1335 1598 IPR036485 GO:0016491
Viun1g01621 1617 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 101 637 IPR029055 -
Viun1g01621 1617 Pfam Glutamate synthase central domain 550 842 IPR006982 GO:0006807|GO:0015930
Viun1g01621 1617 CDD gltB_C 1342 1592 IPR002489 GO:0016491
Viun1g01621 1617 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 527 889 - -
Viun1g01621 1617 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 1323 1598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01621 Viun-Chr1 27917487 27950554 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01621 K00284 - gmx:548016 3076.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01621 1 27917487 27950554 Viun1g01621 1 27917487 27950554 ECH