Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01608 ATGTGGGCTGTCCGTCGTGCTTCCGTCCCTCTCAGGACCCGAGGGTACAATGTGAGAACTTCTTTTATCAAATTAGCGCGAACTAATTGTGTGGAAGAAGAGAGTGGTATCACCGAGTCTCATGCAATAACACAAGGTGGATTGTTGTTGTGGAATCAACGTTTTCATTCAGAACAAAGTGCATCACTGGATTTTACTGTGTGGAGACGCGGAATTTCTTCTAGTAGCACCAAAGAGGATGATGATTTGGAGGATGGGTTTTCCGAGCTGGATACACCTGCTGAGGCAGAAAATGAAAATGACAATCTTTTAGATTCTGATGCCGAAAGTGAAATTGACAACCTTTTAGATTCTGATGCCGACGATGGTGATAAGGAGAATGTCGAGGAGCCTCACAACGAGGTCGATGAGGTGGTCAAAGAGGAAGGAAAACCGCGTCGTGGAAGGGTTGAATCTGAACTATTTAATGAGATCATGAATTCGCCGCCGGGTATGTCTATTGATTTGGTTATGGATAACTGGTTAGCTGAAGGGAATGAACTAACCAGAGATGAAGTGTCTCATGCGATGCTTTTTCTCCGAAGGCGAAAAATGTTTGGGAGAGCTTTGCAGCTCTCAGAGTGGCTCGAGTCAAAAAAACAGGTTGAGTTTCTCGAAAGAGATTATGCCAGTCGCCTTGATTTAATTGCCAAAACACGTGGTTTAATTAAGGCTGAGGCTTACATCGAGACTATTCCAGAATCTTGTAACAGAGAGATAATGTATCGGACTTTATTGTTCAACTGTGTTGGTCAGAACAATGTGAAGAAAGCAGAGGAAGTTTTCAGTAAACTGAAGCATTTGGACTTGCCTGTTACAGTATTTGCATGCAATCAGATGTTACTATTGTATAAGAGGAACAACCAGAAGAAAATAGCTGATGTGTTATTATTGATGGAAAATGAGAATATCAAACCTTCTTCTCTTACTTACTCAATCTTAATAGACACAAAAGGTCAGTCCAAAGATATTGATGGAATGGATCTAATTGTTGATAGAATGAAAACAGAAGGCATTGAACTAGACATTAAAACACAAGCTGTTTTGGCTAGGCATTACATCTCAGCTGGGCTTCAAGATAAAGCGGTGGCTTTATTGAAGGAGATGGAAGGTGGAAACTTAAAACAGGATCGGTGGCTATGCCAAATTTTACTTCCCCTCTATGCAAACCTTGGAAAGGTGGATGAAGTGGAAAGAATTTGGAAGGTATGTGAGACAAACCCTCGGTATGATGAGTGTCTAGTGGCAATTGAAGCCTGGGGAAAGTTGAATAAGGTTGACGAAGCAGAGAATGTTTTTGAGACAATGGTAAAGAGATGGAAGCTTTCTTCCAAGACCAGTTCTGTACTGTTGAAGGTTTATGCAAATCATAAGATGATTACGAAGGGTAAGGATCTTATTAAGCGAATGGGAGAAAGTGGGTGCCGAGTGGGCCCACTAACCTGGAATGCAATAGTGAAACTCTATGTCCAAACCGGGGAAGTGGAGAAGGCCGACTCTGTTCTTCATAGGGCCGCCCAGCAGAGCCAGATGAAGCCAATGTTTTCCACCTACTTAACTATTTTGCAGCAATATGCTAAGAGGGGTGATATTCATAATTCAGAAAAGATATTTTATAGAATGAAAGAGTATCAATCTAAAACAAAAATGTACCAAGTTTTATTGACTGCCTATGTAAATGCAAAGGTTCCAGCCTATGGGATTAGAGATAGGTTAAGAGCTGATAACATAAGTCCCAATAAAACTTTGGCAAGTCTGTTGGTTCAAGTTGATGGATTTAGGAAGAATCCACTCTCCGATTTGCTTGACTGA 1851 0.4117 MWAVRRASVPLRTRGYNVRTSFIKLARTNCVEEESGITESHAITQGGLLLWNQRFHSEQSASLDFTVWRRGISSSSTKEDDDLEDGFSELDTPAEAENENDNLLDSDAESEIDNLLDSDADDGDKENVEEPHNEVDEVVKEEGKPRRGRVESELFNEIMNSPPGMSIDLVMDNWLAEGNELTRDEVSHAMLFLRRRKMFGRALQLSEWLESKKQVEFLERDYASRLDLIAKTRGLIKAEAYIETIPESCNREIMYRTLLFNCVGQNNVKKAEEVFSKLKHLDLPVTVFACNQMLLLYKRNNQKKIADVLLLMENENIKPSSLTYSILIDTKGQSKDIDGMDLIVDRMKTEGIELDIKTQAVLARHYISAGLQDKAVALLKEMEGGNLKQDRWLCQILLPLYANLGKVDEVERIWKVCETNPRYDECLVAIEAWGKLNKVDEAENVFETMVKRWKLSSKTSSVLLKVYANHKMITKGKDLIKRMGESGCRVGPLTWNAIVKLYVQTGEVEKADSVLHRAAQQSQMKPMFSTYLTILQQYAKRGDIHNSEKIFYRMKEYQSKTKMYQVLLTAYVNAKVPAYGIRDRLRADNISPNKTLASLLVQVDGFRKNPLSDLLD 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01608 616 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 427 610 - -
Viun1g01608 616 Pfam PPR repeat 430 452 IPR002885 -
Viun1g01608 616 Pfam PPR repeat 529 556 IPR002885 -
Viun1g01608 616 Pfam PPR repeat 461 488 IPR002885 -
Viun1g01608 616 Pfam PPR repeat 494 517 IPR002885 -
Viun1g01608 616 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 251 426 - -
Viun1g01608 616 SUPERFAMILY TPR-like 359 569 IPR011990 GO:0005515
Viun1g01608 616 Pfam Pentatricopeptide repeat domain 274 332 IPR002885 -
Viun1g01608 616 MobiDBLite consensus disorder prediction 74 149 - -
Viun1g01608 616 MobiDBLite consensus disorder prediction 125 149 - -
Viun1g01608 616 PANTHER OS12G0527900 PROTEIN 71 593 - -
Viun1g01608 616 MobiDBLite consensus disorder prediction 82 124 - -
Viun1g01608 616 Gene3D Tetratricopeptide repeat domain 426 610 IPR011990 GO:0005515
Viun1g01608 616 Gene3D Tetratricopeptide repeat domain 250 425 IPR011990 GO:0005515
Viun1g01608 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 526 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01608 Viun-Chr1 27754898 27760285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01608 163 518 EF-hand Containing Proteins AT1G02150 23.306 1.01e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01608 - - gmx:100500196 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01608 1 27754898 27760285 Viun1g01608 1 27754898 27760285 ECH