Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01607 ATGGATCAAGCAGAGCTTGTGCGAGTTTTTCAATTGTTTGATCGAAACGGGGATGGGCGAATCACGCAGAAGGAGCTGACAGACTCGTTGAAAAACCTGGGAATCTCGATCTCGGAGCCAGACTTGACCCAAATGATCGAGAAAATCGACGTTAACGGAGACGGGTTCGTGGACATGGACGAGTTCGGAGAGTTGTACAATGCGATTATGGACGAGAAAAACGAGGAGGAGGACATGAGGGAAGCATTCAACGTGTTCGATCAAAATGGAGATGGGTTCATCACTGGAGAGGAATTGGGCGCGGTGTTGTGTTCTTTGGGGCTAAAGCATGGCAAAACCATTGATTATTGCATGAGCATGATCAAGAAAGTGGACGTCGATGGCGATGGAATGGTTAACTACAAAGAGTTTAAGCAAATGATGAAGGAGGGAGGTTTTGCCTCACCTTCGATGCTCTGA 459 0.4728 MDQAELVRVFQLFDRNGDGRITQKELTDSLKNLGISISEPDLTQMIEKIDVNGDGFVDMDEFGELYNAIMDEKNEEEDMREAFNVFDQNGDGFITGEELGAVLCSLGLKHGKTIDYCMSMIKKVDVDGDGMVNYKEFKQMMKEGGFASPSML 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01607 152 SUPERFAMILY EF-hand 4 141 IPR011992 -
Viun1g01607 152 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Viun1g01607 152 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Viun1g01607 152 CDD EFh 78 142 IPR002048 GO:0005509
Viun1g01607 152 SMART efh_1 116 144 IPR002048 GO:0005509
Viun1g01607 152 SMART efh_1 78 106 IPR002048 GO:0005509
Viun1g01607 152 SMART efh_1 41 69 IPR002048 GO:0005509
Viun1g01607 152 SMART efh_1 5 33 IPR002048 GO:0005509
Viun1g01607 152 FunFam Calmodulin-like protein 3 1 70 - -
Viun1g01607 152 Gene3D - 68 145 - -
Viun1g01607 152 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 77 142 - -
Viun1g01607 152 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Viun1g01607 152 Gene3D - 1 67 - -
Viun1g01607 152 FunFam calmodulin-like protein 3 72 145 - -
Viun1g01607 152 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Viun1g01607 152 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Viun1g01607 152 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Viun1g01607 152 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Viun1g01607 152 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Viun1g01607 152 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Viun1g01607 152 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01607 Viun-Chr1 27742709 27743592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01607 1 148 EF-hand Containing Proteins AT1G05990 73.826 1.27e-67 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01607 K13448 - gmx:100806637 265.388