Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01594 ATGAATAATGCTGCTGAAAGGCCACTTAATGGAGACGTAGAGGAGGAGGATGACGATGATGATGCAGACCTTGAAGCCTGGGAGAGAACTTACGCAGAAGATAGATCATGGGAGGCTTTGCAGGAGGATGAATCTGGACTTCTTCGCCCTATTGACACTACAGCCATTTACCATGCTCAGTATCGCAGGCGCCTTCGTAACCTTGCTGCCACTGCGGCTACTGCACGAATTCAGAAGGGGCTTATACGATACCTGTACATTGTCGTTGACCTGTCTAAGGCAGCTTCAGAGAGAGACTTCCGACCAAGTAGGATGGCTGTGATTGGGAAACAGGTTGAGGTATTTATCAGGGAGTTCTTTGATCAGAATCCACTTAGTCACGTTGGTCTGGTGACTATAAAAGATGGGATTGCTAATTGCATAACAGAACTTGGTGGCAGTCCCGAGTCTCACATCAACGCTTTAATGGGTAAACTGGAATGCTCAGGGGATGCCTCCTTACAAAATGCACTAGACCTTGTTCTTGGATGTCTAAATCAAATCCCATCATATGGTCATCGAGAAGCTCTTATCTTATATTCGGCTCTCAGTACGTGTGATCCTGGTGATCTCATGGAAACCATTCAAAAATGCAAAAAAAGTAAAATAAGGTGCTCCGTCATTGGTCTTGCTGCTGAAATGTTTGTATGTAAACATCTCTGCCAGGAAACTGGTGGGACTTATTCTGTTGCTCTAGATGAGTCCCACTTTAAAGAGTTGATCTTGGAGCATGCACCACCACCTCCAGCAATAGCAGAGTATGCTACTGCTAATTTAATTAAGATGGGTTTCCCACAACGGTCAGCTGAGGGTTCTGTCGCAATATGCACATGTCATGAAGAGGCTAAGGCTGGAGGGGGATACACTTGTCCACGATGCAAAGTTCGTGTCTGTGAGCTTCCCACTGAATGTCGAATCTGTGGATTGACCCTTATTTCTTCACCCCATTTGGCAAGGTCATACCATCATCTATTTCCTATTGTGATGTTTGATGAGGTCTCTCCATCTCAAAATGATTCTAGCCGCAGTTTTCCTAATACTTGTTTTGGTTGTCAAGAAAGTCTTCTTAGTCAGGGAAACAAGCCTGGACTTTCTGTCGTTTGTCCAAAATGCAAACAACAGTTTTGCCTTGATTGTGACATCTACATTCACGAGAGCTTACATAACTGCCCAGGCTGTGAGAGTTCCAGGCATTCTAAGTCTGTAACTGCTTCTTAA 1257 0.4463 MNNAAERPLNGDVEEEDDDDDADLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRNLAATAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIGKQVEVFIREFFDQNPLSHVGLVTIKDGIANCITELGGSPESHINALMGKLECSGDASLQNALDLVLGCLNQIPSYGHREALILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKAGGGYTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVMFDEVSPSQNDSSRSFPNTCFGCQESLLSQGNKPGLSVVCPKCKQQFCLDCDIYIHESLHNCPGCESSRHSKSVTAS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01594 418 Gene3D von Willebrand factor, type A domain 78 263 IPR036465 -
Viun1g01594 418 ProSitePatterns Zinc finger C2H2 type domain signature. 381 401 IPR013087 -
Viun1g01594 418 NCBIfam transcription factor ssl1 300 408 IPR012170 GO:0000439|GO:0006289|GO:0006351
Viun1g01594 418 SMART VWA_4 82 258 IPR002035 -
Viun1g01594 418 Pfam TFIIH C1-like domain 360 408 IPR004595 GO:0006281|GO:0008270
Viun1g01594 418 SUPERFAMILY Cysteine-rich domain 335 407 IPR046349 -
Viun1g01594 418 PIRSF TFIIH_SSL1 2 409 IPR012170 GO:0000439|GO:0006289|GO:0006351
Viun1g01594 418 SMART C1_4_2 360 408 IPR004595 GO:0006281|GO:0008270
Viun1g01594 418 Pfam Ssl1-like 88 278 IPR007198 -
Viun1g01594 418 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 16 413 - -
Viun1g01594 418 FunFam General transcription factor IIH subunit 338 414 - -
Viun1g01594 418 CDD vWA_transcription_factor_IIH_type 80 262 IPR007198 -
Viun1g01594 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 416 IPR013083 -
Viun1g01594 418 FunFam General transcription factor IIH subunit 2 78 263 - -
Viun1g01594 418 SUPERFAMILY vWA-like 79 247 IPR036465 -
Viun1g01594 418 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01594 Viun-Chr1 27634589 27638350 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01594 K03142 - gmx:100803090 791.956